BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0344300 Os03g0344300|AK068651
(157 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15880.1 | chr4:9012769-9015797 FORWARD LENGTH=490 200 3e-52
AT4G00690.1 | chr4:281313-283129 FORWARD LENGTH=349 192 5e-50
AT3G06910.1 | chr3:2178905-2181188 REVERSE LENGTH=503 189 4e-49
AT1G10570.1 | chr1:3487639-3491102 FORWARD LENGTH=572 49 1e-06
AT1G60220.1 | chr1:22208332-22211910 FORWARD LENGTH=585 48 2e-06
AT1G09730.1 | chr1:3148017-3154236 REVERSE LENGTH=964 48 3e-06
>AT4G15880.1 | chr4:9012769-9015797 FORWARD LENGTH=490
Length = 489
Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 89/145 (61%), Positives = 113/145 (77%)
Query: 13 NGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERTFQYLDSLGCVDH 72
+GY++K+V+RWTT+R+LGY LI+CD IFVP+H+ VHW LAVIN +E YLDSL VD
Sbjct: 345 SGYNFKAVRRWTTQRKLGYALIDCDMIFVPIHRGVHWTLAVINNRESKLLYLDSLNGVDP 404
Query: 73 HVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDIPLQQNGWDCGMFMLKYIDFHSRGLS 132
+ LA+Y+ +E +KS K+ID N+W E V+D+P Q+NG+DCGMFMLKYIDF SRGL
Sbjct: 405 MILNALAKYMGDEANEKSGKKIDANSWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLG 464
Query: 133 MSFSQENMEYFRKRTVMEILRLRAD 157
+ FSQE+M YFR RT EILRLRAD
Sbjct: 465 LCFSQEHMPYFRLRTAKEILRLRAD 489
>AT4G00690.1 | chr4:281313-283129 FORWARD LENGTH=349
Length = 348
Score = 192 bits (489), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 119/160 (74%), Gaps = 9/160 (5%)
Query: 6 VQLACGKNGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERTFQYLD 65
V+L G +GY+YK+V RWTT+R+LGY+LI+CD IFVP+H D+HW L VIN +ER F YLD
Sbjct: 190 VKLVSG-SGYNYKAVSRWTTKRKLGYDLIDCDIIFVPIHIDIHWTLGVINNRERKFVYLD 248
Query: 66 SL-GCVDHHVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDIPLQQNGWDCGMFMLKYI 124
SL V H + +A+Y+ +EVK KS K ID ++W E V++ P QQNG+DCGMFMLKYI
Sbjct: 249 SLFTGVGHTILNAMAKYLVDEVKQKSQKNIDVSSWGMEYVEERPQQQNGYDCGMFMLKYI 308
Query: 125 DFHSRGLSMSFSQ-------ENMEYFRKRTVMEILRLRAD 157
DF+SRGLS+ FSQ ++M YFR RT EILRLRAD
Sbjct: 309 DFYSRGLSLQFSQVIRDVIKKDMPYFRLRTAKEILRLRAD 348
>AT3G06910.1 | chr3:2178905-2181188 REVERSE LENGTH=503
Length = 502
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 114/153 (74%)
Query: 5 LVQLACGKNGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERTFQYL 64
+L GY+Y +V+RWT+ +RLGY L +CDKIF+P+H ++HW LAVIN+K++ FQYL
Sbjct: 350 FTKLVNSATGYNYGAVRRWTSMKRLGYHLKDCDKIFIPIHMNIHWTLAVINIKDQKFQYL 409
Query: 65 DSLGCVDHHVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDIPLQQNGWDCGMFMLKYI 124
DS + + LARY +EV+DKS ++D + W +E V D+P+Q+NG+DCGMFM+KYI
Sbjct: 410 DSFKGREPKILDALARYFVDEVRDKSEVDLDVSRWRQEFVQDLPMQRNGFDCGMFMVKYI 469
Query: 125 DFHSRGLSMSFSQENMEYFRKRTVMEILRLRAD 157
DF+SRGL + F+QE M YFR RT EIL+L+A+
Sbjct: 470 DFYSRGLDLCFTQEQMPYFRARTAKEILQLKAE 502
>AT1G10570.1 | chr1:3487639-3491102 FORWARD LENGTH=572
Length = 571
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 18/113 (15%)
Query: 30 GYELIECDKIFVPVHKDVHWCLAVINMKER------TFQYLDSLGCVDHH-VPRVLARYI 82
G++L IF+P+H+D+HW L +I + ++ T +LDSLG + + + R++
Sbjct: 408 GFDLFCKSYIFIPIHEDLHWSLVIICIPDKEDESGLTIIHLDSLGLHPRNLIFNNVKRFL 467
Query: 83 AEE----VKDKS-NKEIDTNTWHE------ELVDDIPLQQNGWDCGMFMLKYI 124
EE +D + I W + E +P Q+N +DCG+F+L +I
Sbjct: 468 REEWNYLNQDAPLDLPISAKVWRDLPNMINEAEVQVPQQKNDFDCGLFLLFFI 520
>AT1G60220.1 | chr1:22208332-22211910 FORWARD LENGTH=585
Length = 584
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 25/117 (21%)
Query: 30 GYELIECDKIFVPVHKDVHWCLAVINMKER------TFQYLDSLGCVDHHVPRVLARYIA 83
G +L IF+P+H+D+HW L ++ + ++ T +LDSLG H + + +
Sbjct: 420 GIDLFRKAYIFIPIHEDLHWSLVIVCIPDKKDESGLTILHLDSLGL---HSRKSIVENVK 476
Query: 84 EEVKDKSNK----------EIDTNTWH------EELVDDIPLQQNGWDCGMFMLKYI 124
+KD+ N I W E V +P Q+N +DCG F+L +I
Sbjct: 477 RFLKDEWNYLNQDDYSLDLPISEKVWKNLPRRISEAVVQVPQQKNDFDCGPFVLFFI 533
>AT1G09730.1 | chr1:3148017-3154236 REVERSE LENGTH=964
Length = 963
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 44/147 (29%)
Query: 20 VKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVI----NMKERTFQYLDS---LGCVDH 72
V++WT + ++ D IFVPV+ ++HW L VI + RT LD + C+ H
Sbjct: 497 VRKWTRK----VDMFGKDYIFVPVNYNLHWSLIVICHPGEVANRTDLDLDDSKKVPCILH 552
Query: 73 ---------HVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDI--------------PL 109
+ ++ Y+ EE K++ H+E DDI P
Sbjct: 553 MDSIKGSHAGLKNLVQTYLCEEWKER----------HKETSDDISSRFMNLRFVSLELPQ 602
Query: 110 QQNGWDCGMFMLKYIDFHSRGLSMSFS 136
Q+N +DCG+F+L Y++ ++FS
Sbjct: 603 QENSFDCGLFLLHYLELFLAEAPLNFS 629
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,506,498
Number of extensions: 145280
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 7
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)