BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0402800 Os03g0402800|AK061842
(228 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0402800 ZIM domain containing protein 417 e-117
Os07g0615200 ZIM domain containing protein 235 2e-62
Os03g0180900 ZIM domain containing protein 99 2e-21
Os09g0439200 ZIM domain containing protein 88 6e-18
>Os03g0402800 ZIM domain containing protein
Length = 228
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/228 (91%), Positives = 209/228 (91%)
Query: 1 MASAKSGERGSSSFAMACSLLSRYVRQNGAAAGELGLGIRGEADANKGKETMELFPQNSG 60
MASAKSGERGSSSFAMACSLLSRYVRQNGAAAGELGLGIRGEADANKGKETMELFPQNSG
Sbjct: 1 MASAKSGERGSSSFAMACSLLSRYVRQNGAAAGELGLGIRGEADANKGKETMELFPQNSG 60
Query: 61 FGSEAAAVKETPDAREQEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVL 120
FGSEAAAVKETPDAREQEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVL
Sbjct: 61 FGSEAAAVKETPDAREQEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVL 120
Query: 121 LPSSATATVADNTKXXXXXXXXXXXXXXXXXXXKPVRPNAADLPQARKASLHRFLEKRKD 180
LPSSATATVADNTK KPVRPNAADLPQARKASLHRFLEKRKD
Sbjct: 121 LPSSATATVADNTKVSAVPAPASALPVAQANAPKPVRPNAADLPQARKASLHRFLEKRKD 180
Query: 181 RLQAKAPYQGSPSDASPVKKELQESQPWLGLGPQVAAPDLSLRQESSQ 228
RLQAKAPYQGSPSDASPVKKELQESQPWLGLGPQVAAPDLSLRQESSQ
Sbjct: 181 RLQAKAPYQGSPSDASPVKKELQESQPWLGLGPQVAAPDLSLRQESSQ 228
>Os07g0615200 ZIM domain containing protein
Length = 244
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/226 (61%), Positives = 154/226 (68%), Gaps = 23/226 (10%)
Query: 7 GERGSSSFAMACSLLSRYVRQNGAAAGELGLGIRGEADANKG---------------KET 51
GER ++SFAMACSLLSRYVRQNGAAA ELGLGIRGE +A + KET
Sbjct: 12 GER-ATSFAMACSLLSRYVRQNGAAAAELGLGIRGEGEAPRAAPATMSLLPGEAERKKET 70
Query: 52 MELFPQNSGFGSEAAAVKETP-DAREQE--KRQLTIFYGGKVLVFDDFPAEKAKDLMQMA 108
MELFPQ++GFG + A ++ DAREQE KRQLTIFYGGKVLVF+DFPA+KAK LMQ+A
Sbjct: 71 MELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFYGGKVLVFNDFPADKAKGLMQLA 130
Query: 109 SKSSSTAQNCVLLPSSATATVADNTKXXXXXXXXXXXX-XXXXXXXKPVRPNAADLPQAR 167
SK S A + A A V DNTK KP R NA+D+P AR
Sbjct: 131 SKGSPVAPQNAA--APAPAAVTDNTKAPMAVPAPVSSLPTAQADAQKPARANASDMPIAR 188
Query: 168 KASLHRFLEKRKDRLQAKAPYQGSPSDASPVKKELQESQPWLGLGP 213
KASLHRFLEKRKDRL AK PYQ SPSDA+PVKKE ESQPWLGLGP
Sbjct: 189 KASLHRFLEKRKDRLNAKTPYQASPSDATPVKKE-PESQPWLGLGP 233
>Os03g0180900 ZIM domain containing protein
Length = 209
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 94/189 (49%), Gaps = 48/189 (25%)
Query: 12 SSFAMACSLLSRYVRQNGAAAGELGL------------GIRGEADANKGKETMELFPQNS 59
S FA+ C LL +Y++++ + G G G E +A + ++TMELFPQ +
Sbjct: 23 SRFAVTCGLLRQYMKEHSGSNGGGGFLPAVTAMSLMTGGADAEEEAPEVRKTMELFPQQA 82
Query: 60 GFGSEAAAVKETPDARE-QEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNC 118
G +K+T + +E EK QLTIFYGG V+VFDDFPAEKA +LM++A STA
Sbjct: 83 G------TLKDTQERKEITEKAQLTIFYGGSVVVFDDFPAEKAGELMKLAGSRDSTAAAA 136
Query: 119 VLLPSSATATVADNTKXXXXXXXXXXXXXXXXXXXKPVRPNAADLPQARKASLHRFLEKR 178
V +A +P D+P ARK SL RFLEKR
Sbjct: 137 VSDAGAAAG-----------------------------QPCLPDMPIARKVSLQRFLEKR 167
Query: 179 KDRLQAKAP 187
K+R+ P
Sbjct: 168 KNRIVVAEP 176
>Os09g0439200 ZIM domain containing protein
Length = 232
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 113/248 (45%), Gaps = 67/248 (27%)
Query: 12 SSFAMACSLLSRYVRQN---GAAAGELGLGIRGEADANKGKETMELF-----PQNSGFGS 63
SSFA+ CSLLS+++++ G LGLG+R A F N G
Sbjct: 17 SSFAVTCSLLSQFLKEKKGGGGGLQGLGLGLRPAPAAPPAAGAGGAFRPPPTTMNLLSGL 76
Query: 64 EAAAVKETPDARE--------------------------QEKRQLTIFYGGKVLVFDDFP 97
+A AV+ P+ E ++ +QLTIFYGGKV+VF++FP
Sbjct: 77 DAPAVEVEPNTAETAADELPLIKAPADQQSDESASEAAGEKAQQLTIFYGGKVVVFENFP 136
Query: 98 AEKAKDLMQMASKSSSTAQNCVLLPSSATATVADNTKXXXXXXXXXXXXXXXXXXXKPVR 157
+ K KDL+Q+ S +N T T A + +P
Sbjct: 137 STKVKDLLQIVSTGDGVDKN--------TGTAATQS------------------LPRPAH 170
Query: 158 PNAADLPQARKASLHRFLEKRKDRLQAKAPYQGSPSDASPVKKELQESQPWLGLGPQVAA 217
+ DLP AR+ SLHRFLEKRK R+ A APYQ + A+P K+ + WLG G +
Sbjct: 171 NSLPDLPIARRNSLHRFLEKRKGRMNANAPYQAN-CTAAP-SKQANGDKSWLGFGQE--- 225
Query: 218 PDLSLRQE 225
++++QE
Sbjct: 226 --MTIKQE 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.124 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,803,817
Number of extensions: 263617
Number of successful extensions: 638
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 5
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)