BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0390900 Os03g0390900|AK068299
(87 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0390900 Conserved hypothetical protein 177 1e-45
Os04g0524400 Conserved hypothetical protein 151 1e-37
Os07g0240300 Conserved hypothetical protein 116 4e-27
AK110446 69 1e-12
>Os03g0390900 Conserved hypothetical protein
Length = 87
Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MARGVSLPADMEAAKDAGIWEVLLLRYFDLQAAPWPLAAMIRAFSMLHNRMLADPSFLFK 60
MARGVSLPADMEAAKDAGIWEVLLLRYFDLQAAPWPLAAMIRAFSMLHNRMLADPSFLFK
Sbjct: 1 MARGVSLPADMEAAKDAGIWEVLLLRYFDLQAAPWPLAAMIRAFSMLHNRMLADPSFLFK 60
Query: 61 VGTEVVIDSRCATFAEDFWAEFELYDP 87
VGTEVVIDSRCATFAEDFWAEFELYDP
Sbjct: 61 VGTEVVIDSRCATFAEDFWAEFELYDP 87
>Os04g0524400 Conserved hypothetical protein
Length = 399
Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 80/91 (87%), Gaps = 7/91 (7%)
Query: 2 ARGVSLPADM-EAAKDAGIWEVLLLRYFDLQAAPWPLAAMIRAFSMLHNRMLADPSFLFK 60
ARGVSLPADM EAAKDAGI EVLLLRYFDLQA PWPLAAMIRAFSML NRMLADPSFLFK
Sbjct: 127 ARGVSLPADMMEAAKDAGIREVLLLRYFDLQAGPWPLAAMIRAFSMLRNRMLADPSFLFK 186
Query: 61 VGTEVVIDSRCATFA------EDFWAEFELY 85
VGTEVVIDS CATFA EDFWAEFELY
Sbjct: 187 VGTEVVIDSCCATFAEVQKRGEDFWAEFELY 217
>Os07g0240300 Conserved hypothetical protein
Length = 443
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 71/93 (76%), Gaps = 10/93 (10%)
Query: 3 RGVSLP---ADM-EAAKDAGIWEVLLLRYFDLQAAPWPLAAMIRAFSMLHNRMLADPSFL 58
RGVSLP ADM EAAK GI ++LLLRY D+QA+ WPL IR+ S+L NRML DPSFL
Sbjct: 169 RGVSLPSLPADMIEAAKSVGIQKLLLLRYLDMQASAWPLGPAIRSCSLLRNRMLVDPSFL 228
Query: 59 FKVGTEVVIDSRCATFA------EDFWAEFELY 85
FK+GTE+VID+ CATFA E+FW+EFELY
Sbjct: 229 FKIGTEIVIDTCCATFAEVQKRGEEFWSEFELY 261
>AK110446
Length = 413
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 5 VSLPADM-EAAKDAGIWEVLLLRYFDLQAAPWPLAAMIRAFSMLHNRMLADPSFLFKVGT 63
V LPADM E AK GI L +Y LQ+ + +++ F + +RM+AD FL KV
Sbjct: 145 VRLPADMLETAKSYGIRSTALAKYISLQSLVF-TGGLVQRFPWIRDRMIADEKFLLKVVA 203
Query: 64 EVVIDSRCATFAE------DFWAEFELY 85
EV+IDS CAT AE +FW EFE Y
Sbjct: 204 EVLIDSGCATVAEVRKRGDEFWQEFEFY 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,788,484
Number of extensions: 88812
Number of successful extensions: 215
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 4
Length of query: 87
Length of database: 17,035,801
Length adjustment: 57
Effective length of query: 30
Effective length of database: 14,059,603
Effective search space: 421788090
Effective search space used: 421788090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)