BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0375900 Os03g0375900|AK107064
(207 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0375900 Amino acid/polyamine transporter I family protein 302 1e-82
Os02g0700500 Amino acid/polyamine transporter I family protein 94 8e-20
Os03g0375300 Amino acid/polyamine transporter I family protein 87 7e-18
Os03g0576900 Amino acid/polyamine transporter I family protein 87 8e-18
Os03g0374900 Amino acid/polyamine transporter I family protein 73 1e-13
>Os03g0375900 Amino acid/polyamine transporter I family protein
Length = 207
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/207 (78%), Positives = 162/207 (78%)
Query: 1 MNTYAGMIAGGWLKYWIEVGAVLSTIGLYSATLSSAAFQLLGMADLGLLPRAFALRAPVF 60
MNTYAGMIAGGWLKYWIEVGAVLSTIGLYSATLSSAAFQLLGMADLGLLPRAFALRAPVF
Sbjct: 1 MNTYAGMIAGGWLKYWIEVGAVLSTIGLYSATLSSAAFQLLGMADLGLLPRAFALRAPVF 60
Query: 61 DTPWVGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEFAAFVXXXXXXXXXXXXYXX 120
DTPWVGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEFAAFV Y
Sbjct: 61 DTPWVGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEFAAFVRLRARLPAMPRPYAV 120
Query: 121 XXXXXXXXXXXXXXXXXFLVFVMAIAGWKVYAISAVFTAAGVAVYYLMDLCKARGWLTFX 180
FLVFVMAIAGWKVYAISAVFTAAGVAVYYLMDLCKARGWLTF
Sbjct: 121 PLRGLPAAAALCAVPSAFLVFVMAIAGWKVYAISAVFTAAGVAVYYLMDLCKARGWLTFS 180
Query: 181 XXXXXXXXXXXXXMMYRRQGSTASEVV 207
MMYRRQGSTASEVV
Sbjct: 181 AAAADRGGSGGDAMMYRRQGSTASEVV 207
>Os02g0700500 Amino acid/polyamine transporter I family protein
Length = 531
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
Query: 5 AGMIAGGWLKYWIEVGAVLSTIGLYSATLSSAAFQLLGMADLGLLPRAFALRAPVFDTPW 64
A ++ G WL +W++ A LS +G++ A +SS ++QLLGMA+ G+LP FA R+ + TP
Sbjct: 335 AKLLGGAWLMWWVQSAAALSNMGMFVAEMSSDSYQLLGMAERGMLPSFFAARS-RYGTPL 393
Query: 65 VGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEFAAFVXXXXXXXXXXXXYXXXXXX 124
GIL +A+ L +S SF IVA+ NFLY GMLLEF AF+ Y
Sbjct: 394 AGILFSASGVLLLSMMSFQEIVAAENFLYCFGMLLEFVAFILHRVRRPDAARPYRVPLGT 453
Query: 125 XXXXXXXXXXXXXFLVFVMAIAGWKVYAISAVFTAAGVAVYYLMDLCKARGWLTF 179
V V+A++ KV +S A G+ + + + + WL F
Sbjct: 454 AGCVAMLVPPTALIAV-VLALSTLKVAVVSLGAVAMGLVLQPALRFVEKKRWLRF 507
>Os03g0375300 Amino acid/polyamine transporter I family protein
Length = 163
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 43 MADLGLLPRAFALRAPVFD-TPWVGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEF 101
MA+LGLLP FA R P TPWV + A+AA+++A+SF FD +VA+AN LYSLG LLEF
Sbjct: 1 MAELGLLPSVFARRGPGRSATPWVAVAASAAVSVAVSFLGFDDVVATANLLYSLGALLEF 60
Query: 102 AAFVXXXXXXXXXXXXYXX--XXXXXXXXXXXXXXXXXFLVFVMAIAGWKVYAISAVFTA 159
AAF+ FL +V+A+AGW+V A++A TA
Sbjct: 61 AAFLRLRAREESPSSLKRPYRVPLPLPALAAMCLVPSAFLAYVVAVAGWRVSAVAAALTA 120
Query: 160 AGVAVYYLMDLCKARGWLTF 179
GV + M +C++R WL F
Sbjct: 121 LGVGWHGAMRVCRSRKWLRF 140
>Os03g0576900 Amino acid/polyamine transporter I family protein
Length = 550
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 2/175 (1%)
Query: 5 AGMIAGGWLKYWIEVGAVLSTIGLYSATLSSAAFQLLGMADLGLLPRAFALRAPVFDTPW 64
A ++ G WL W++ A LS +G + +SS ++QLLGMA+ G+LP FA R+ + TP
Sbjct: 354 ARILGGFWLHSWLQAAAALSNMGNFVTEMSSDSYQLLGMAERGMLPEFFAKRS-RYGTPL 412
Query: 65 VGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEFAAFVXXXXXXXXXXXXYXXXXXX 124
+GI+ +A + +S+ SF I+A+ N+LY GM+LEF AF+ Y
Sbjct: 413 IGIMFSAFGVVLLSWMSFQEIIAAENYLYCFGMILEFIAFIKLRVVHPNASRPY-KIPLG 471
Query: 125 XXXXXXXXXXXXXFLVFVMAIAGWKVYAISAVFTAAGVAVYYLMDLCKARGWLTF 179
+V VM +A +KV +S + G + + + R WL F
Sbjct: 472 TIGAVLMIIPPTILIVVVMMLASFKVMVVSIMAMLVGFVLQPALVYVEKRRWLKF 526
>Os03g0374900 Amino acid/polyamine transporter I family protein
Length = 212
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Query: 43 MADLGLLPRAFALRAPVFD-TPWVGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEF 101
MA+LGLLP FA R P TPWV + A+AA+++A+SF FD +VA+AN LYSLG LLEF
Sbjct: 1 MAELGLLPSVFARRGPGRSATPWVAVAASAAVSVAVSFLGFDDVVATANLLYSLGTLLEF 60
Query: 102 AAF--VXXXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXFLVFVMAIAGWKVYAISAVFTA 159
AAF + FL +V+A+AGW+V AI+A TA
Sbjct: 61 AAFLWLRCRGRHAAALKRPYRVPLPLPALAAMCLVPSAFLAYVIAVAGWRVSAIAAGLTA 120
Query: 160 AGVAVYYLMDL 170
GV + +M +
Sbjct: 121 LGVGWHGVMRV 131
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,434,238
Number of extensions: 125484
Number of successful extensions: 388
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 5
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 153 (63.5 bits)