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Os03g0375900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid/polyamine transporter I family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0261) R2 : 0.295
β1 : 1.32 (0.0957) R2dD : 0.304 R2D : 0.266
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.21 (0.0558) R2dN8 : 0.0293 R2N8 : -0.00891
σ : 0.491
deviance : 110.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.69 0.442 10.1 1.09 0.436 -0.221 -0.304 -3.13 0.255 12.5 9.7 4817 -- --
93.06 0.449 10.2 1.42 0.475 0.493 -0.433 -- 0.258 12.6 8.756 2684 -- --
89.06 0.44 10.1 1.06 0.437 -0.223 -- -3.14 0.253 12.6 9.748 4817 -- --
93.87 0.451 10.2 1.45 0.454 0.494 -- -- 0.27 12.6 8.685 2686 -- --
100.51 0.467 10.1 1.08 -- -0.102 -- -3.02 0.218 -- 9.774 4817 -- --
97.37 0.463 10.2 1.35 0.439 -- -0.404 -- 0.219 12.5 -- -- -- --
98.05 0.464 10.2 1.33 0.441 -- -- -- 0.218 12.6 -- -- -- --
105.17 0.478 10.2 1.48 -- 0.409 -- -- 0.217 -- 8.498 4569 -- --
123.53 0.518 10.2 -- 0.394 -0.866 -- -- 0.188 13.1 7.5 20214 -- --
110.26 0.491 10.2 1.32 -- -- -- -- 0.21 -- -- -- -- --
144.88 0.563 10.2 -- 0.421 -- -- -- 0.0691 12.5 -- -- -- --
128.81 0.529 10.3 -- -- -0.835 -- -- -0.113 -- 6.519 47520 -- --
156.04 0.583 10.2 -- -- -- -- -- 0.0638 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.92 atmosphere 1000.0 270 > th dose independent rect. 11 4
2 79.30 wind 7.0 270 < th dose independent rect. 15 20
4 80.04 atmosphere 995.0 270 > th dose dependent rect. 11 4
5 80.08 radiation 1.0 270 > th dose independent rect. 11 4
6 80.34 precipitation 0.1 270 < th dose independent rect. 15 20
7 80.34 precipitation 0.1 270 < th dose dependent rect. 15 20
9 80.47 temperature 10.0 270 > th dose independent rect. 11 4
10 80.47 atmosphere 1015.0 270 < th dose independent rect. 11 4
11 80.47 precipitation 0.1 270 < th dose independent rect. 11 4
12 80.47 temperature 10.0 270 > th dose independent rect. 15 20
13 80.47 precipitation 0.1 270 < th dose dependent rect. 11 4
15 80.73 atmosphere 995.0 10 > th dose dependent rect. 12 6
16 80.76 wind 9.0 270 < th dose independent rect. 11 4
21 81.04 humidity 90.0 10 < th dose independent rect. 12 6
22 81.04 wind 1.0 270 > th dose independent rect. 15 20
28 81.29 radiation 10.0 30 < th dose dependent sin 16 NA
29 81.30 humidity 90.0 270 < th dose independent rect. 11 4
30 81.31 wind 1.0 270 > th dose independent rect. 11 4
31 81.32 radiation 1.0 30 > th dose independent rect. 12 7
43 81.34 humidity 50.0 10 > th dose independent rect. 18 18
44 81.39 humidity 50.0 270 > th dose dependent rect. 20 10
47 81.52 temperature 15.0 270 > th dose independent rect. 20 10
52 81.66 wind 9.0 270 < th dose independent rect. 6 14
55 81.72 precipitation 0.1 10 < th dose independent rect. 12 6
56 81.72 precipitation 0.1 10 < th dose dependent rect. 12 6
70 81.78 wind 1.0 90 > th dose independent rect. 17 18
73 81.87 wind 9.0 10 < th dose independent rect. 12 6
74 81.87 radiation 1.0 270 < th dose independent rect. 20 13
75 81.88 radiation 1.0 30 > th dose independent sin 16 NA
76 81.91 atmosphere 1000.0 10 > th dose independent rect. 12 6
82 81.97 temperature 10.0 10 > th dose independent rect. 12 6
84 81.97 atmosphere 1015.0 10 < th dose independent rect. 12 6
85 81.97 temperature 10.0 10 > th dose independent rect. 18 18
88 81.98 atmosphere 995.0 10 > th dose independent rect. 18 18
90 82.02 radiation 1.0 30 < th dose independent sin 17 NA
96 82.06 temperature 30.0 270 < th dose independent rect. 20 10
97 82.06 humidity 50.0 270 > th dose independent rect. 20 10
100 82.06 atmosphere 995.0 270 > th dose independent rect. 20 10
101 82.06 radiation 20.0 270 < th dose independent rect. 20 10
104 82.06 temperature 10.0 270 > th dose independent rect. 6 14
105 82.06 atmosphere 1015.0 270 < th dose independent rect. 6 14
112 82.14 precipitation 0.1 270 < th dose independent rect. 6 14
113 82.14 precipitation 0.1 270 < th dose dependent rect. 6 14
117 82.16 precipitation 0.1 90 < th dose independent rect. 11 7
119 82.16 precipitation 0.1 90 < th dose dependent rect. 11 7
137 82.24 radiation 40.0 270 < th dose dependent rect. 20 10
140 82.28 wind 9.0 270 < th dose independent rect. 20 10
142 82.29 humidity 50.0 270 > th dose independent rect. 15 20
147 82.34 humidity 50.0 270 > th dose independent rect. 11 4
160 82.47 atmosphere 995.0 90 > th dose independent rect. 17 18
170 82.51 precipitation 0.1 10 < th dose independent rect. 18 18
171 82.51 precipitation 0.1 10 < th dose dependent rect. 18 18
195 82.61 temperature 10.0 270 > th dose dependent rect. 11 4
203 82.69 temperature 10.0 10 > th dose dependent rect. 12 6
222 82.88 temperature 10.0 270 > th dose dependent rect. 3 8
250 82.97 precipitation 0.1 270 < th dose independent rect. 20 10
258 82.97 precipitation 0.1 270 < th dose dependent rect. 20 10
262 82.99 radiation 1.0 270 > th dose independent rect. 16 19
265 83.00 precipitation 0.1 90 < th dose independent rect. 18 17
267 83.00 precipitation 0.1 90 < th dose dependent rect. 18 17
272 83.02 temperature 15.0 270 > th dose dependent rect. 6 4
287 83.09 atmosphere 995.0 270 > th dose independent rect. 15 20
290 83.11 wind 1.0 10 > th dose independent rect. 12 6
303 83.20 radiation 1.0 270 < th dose dependent rect. 20 13
306 83.23 temperature 10.0 1440 > th dose independent rect. 13 6
311 83.23 temperature 10.0 1440 > th dose independent rect. 19 18
314 83.23 atmosphere 995.0 1440 > th dose independent rect. 19 18
316 83.25 temperature 10.0 270 > th dose dependent rect. 5 6
354 83.52 humidity 80.0 90 < th dose independent rect. 18 17
375 83.68 radiation 1.0 30 > th dose dependent sin 14 NA
396 83.85 temperature 20.0 10 > th dose dependent rect. 6 6
403 83.88 temperature 20.0 720 > th dose independent rect. 20 1
406 83.90 temperature 20.0 10 > th dose dependent rect. 8 4
432 84.03 temperature 10.0 30 > th dose dependent rect. 18 18
435 84.05 wind 1.0 270 > th dose independent rect. 15 10
436 84.05 temperature 20.0 270 > th dose independent rect. 11 15
464 84.14 humidity 50.0 90 > th dose dependent rect. 18 1
483 84.20 atmosphere 1015.0 270 < th dose independent rect. 20 10
485 84.21 humidity 50.0 10 > th dose independent rect. 12 6
497 84.27 radiation 1.0 270 < th dose independent sin 10 NA
505 84.28 wind 1.0 270 > th dose dependent rect. 11 4
535 84.39 temperature 30.0 90 < th dose independent rect. 18 1
538 84.40 wind 1.0 90 > th dose independent rect. 17 11
550 84.43 wind 1.0 270 > th dose independent rect. 15 12
563 84.46 wind 1.0 90 > th dose independent rect. 17 8
582 84.49 wind 1.0 270 > th dose independent rect. 6 14
593 84.51 radiation 1.0 270 > th dose dependent rect. 11 4
635 84.58 wind 1.0 270 > th dose independent rect. 15 8
683 84.79 humidity 90.0 90 < th dose dependent rect. 18 17
697 84.86 temperature 30.0 30 < th dose independent rect. 12 6
703 84.88 humidity 70.0 30 > th dose independent rect. 18 2
741 85.01 atmosphere 1015.0 10 < th dose independent rect. 18 18
753 85.04 wind 9.0 270 < th dose dependent rect. 11 4
761 85.06 humidity 90.0 270 < th dose dependent rect. 11 4
777 85.12 radiation 1.0 270 < th dose dependent sin 9 NA
779 85.13 humidity 50.0 10 > th dose dependent rect. 18 2
780 85.14 radiation 1.0 270 > th dose dependent rect. 12 2
782 85.14 temperature 25.0 90 > th dose dependent rect. 18 17
790 85.17 radiation 40.0 10 < th dose independent rect. 12 6
812 85.20 radiation 1.0 270 > th dose independent sin 10 NA
816 85.20 radiation 10.0 90 < th dose dependent rect. 8 16
852 85.26 humidity 50.0 270 > th dose independent rect. 6 14
880 85.30 radiation 1.0 270 > th dose independent rect. 5 6
888 85.31 wind 9.0 30 < th dose dependent rect. 18 18
929 85.38 wind 9.0 30 < th dose dependent rect. 12 6
932 85.39 wind 7.0 90 < th dose independent rect. 17 7
934 85.39 temperature 15.0 10 > th dose dependent rect. 3 9
937 85.40 atmosphere 1000.0 90 > th dose independent rect. 24 17
988 85.48 atmosphere 1015.0 90 < th dose independent rect. 23 18