BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0375900 Os03g0375900|AK107064
(207 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13620.1 | chr3:4450904-4452556 REVERSE LENGTH=479 134 3e-32
AT3G19553.1 | chr3:6790988-6792507 REVERSE LENGTH=480 107 3e-24
AT1G31830.1 | chr1:11418875-11420362 REVERSE LENGTH=496 97 6e-21
AT5G05630.1 | chr5:1682541-1684013 FORWARD LENGTH=491 96 1e-20
AT1G31820.1 | chr1:11416691-11418139 REVERSE LENGTH=483 94 5e-20
>AT3G13620.1 | chr3:4450904-4452556 REVERSE LENGTH=479
Length = 478
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 101/165 (61%), Gaps = 1/165 (0%)
Query: 5 AGMIAGGWLKYWIEVGAVLSTIGLYSATLSSAAFQLLGMADLGLLPRAFALRAPVFDTPW 64
A MIAG WLK WIE+GAVLS+IGL+ A LSS+A+QL GMA+LG LP+ F +R+ F+TPW
Sbjct: 282 AEMIAGKWLKIWIEIGAVLSSIGLFEAQLSSSAYQLEGMAELGFLPKFFGVRSKWFNTPW 341
Query: 65 VGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEFAAFVXXXXXXXXXXXXYXXXXXX 124
VGIL +A ++L +S+ +F I++SANFLY+LGM LEFA+F+ Y
Sbjct: 342 VGILISALMSLGLSYMNFTDIISSANFLYTLGMFLEFASFIWLRRKLPQLKRPY-RVPLK 400
Query: 125 XXXXXXXXXXXXXFLVFVMAIAGWKVYAISAVFTAAGVAVYYLMD 169
FLV ++ A VY I V T + Y+L++
Sbjct: 401 IPGLVVMCLIPSAFLVLILVFATKIVYLICGVMTIGAIGWYFLIN 445
>AT3G19553.1 | chr3:6790988-6792507 REVERSE LENGTH=480
Length = 479
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 3/175 (1%)
Query: 6 GMIAGG-WLKYWIEVGAVLSTIGLYSATLSSAAFQLLGMADLGLLPRAFALRAPVFDTPW 64
GM+ GG WLK WI+ A +S +GL+ A +SS AFQLLGM+++G+LP FA R+ + TP
Sbjct: 276 GMLIGGVWLKGWIQAAAAMSNLGLFEAEMSSDAFQLLGMSEIGMLPAFFAQRS-KYGTPT 334
Query: 65 VGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEFAAFVXXXXXXXXXXXXYXXXXXX 124
+ IL +A + +S+ SF I+ NFLY+LGMLLEFAAFV Y
Sbjct: 335 ISILCSATGVIFLSWMSFQEIIEFLNFLYALGMLLEFAAFVKLRIKKPDLHRPY-RVPLN 393
Query: 125 XXXXXXXXXXXXXFLVFVMAIAGWKVYAISAVFTAAGVAVYYLMDLCKARGWLTF 179
++ VM +A K + IS V G +Y + L K + W F
Sbjct: 394 TFGVSMLCLPPSLLVILVMVLAAPKTFLISGVIIVLGFCLYPFLTLVKEKQWARF 448
>AT1G31830.1 | chr1:11418875-11420362 REVERSE LENGTH=496
Length = 495
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 2/175 (1%)
Query: 5 AGMIAGGWLKYWIEVGAVLSTIGLYSATLSSAAFQLLGMADLGLLPRAFALRAPVFDTPW 64
A + G WL++W++ A S +G++ A +SS +FQLLGMA+ G+LP FA R+ + TP
Sbjct: 301 AKALGGAWLRWWVQAAAATSNMGMFIAEMSSDSFQLLGMAERGMLPEFFAKRS-RYGTPL 359
Query: 65 VGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEFAAFVXXXXXXXXXXXXYXXXXXX 124
+GIL +A+ + +S+ SF IVA+ N LY +GM+LEF AFV Y
Sbjct: 360 LGILFSASGVVLLSWLSFQEIVAAENLLYCVGMILEFIAFVRMRMKHPAASRPY-KIPIG 418
Query: 125 XXXXXXXXXXXXXFLVFVMAIAGWKVYAISAVFTAAGVAVYYLMDLCKARGWLTF 179
+ V+A++ KV A+S V G ++ L++ + W+ F
Sbjct: 419 TTGSILMCIPPTILICAVVALSSLKVAAVSIVMMIIGFLIHPLLNHMDRKRWVKF 473
>AT5G05630.1 | chr5:1682541-1684013 FORWARD LENGTH=491
Length = 490
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 2/173 (1%)
Query: 7 MIAGGWLKYWIEVGAVLSTIGLYSATLSSAAFQLLGMADLGLLPRAFALRAPVFDTPWVG 66
+I G WL +WI+ A S +G++ A +SS +FQLLGMA+ G+LP FA R+ + TPWVG
Sbjct: 309 VIGGVWLGWWIQAAAATSNMGMFLAEMSSDSFQLLGMAERGMLPEVFAKRS-RYRTPWVG 367
Query: 67 ILATAAITLAMSFTSFDTIVASANFLYSLGMLLEFAAFVXXXXXXXXXXXXYXXXXXXXX 126
IL +A+ + +S+ SF IVA+ N LY GM+LEF FV +
Sbjct: 368 ILFSASGVIILSWLSFQEIVAAENLLYCFGMVLEFITFVRLRMKYPAASRPFKIPVGVLG 427
Query: 127 XXXXXXXXXXXFLVFVMAIAGWKVYAISAVFTAAGVAVYYLMDLCKARGWLTF 179
V +MA KV +S G+ + + + +GWL F
Sbjct: 428 SVLMCIPPTVLIGV-IMAFTNLKVALVSLAAIVIGLVLQPCLKQVEKKGWLKF 479
>AT1G31820.1 | chr1:11416691-11418139 REVERSE LENGTH=483
Length = 482
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 5 AGMIAGGWLKYWIEVGAVLSTIGLYSATLSSAAFQLLGMADLGLLPRAFALRAPVFDTPW 64
A I GGWL+ W++ A S +G++ A +SS +FQLLGMA+LG+LP FA R+ + TP
Sbjct: 288 AKAIGGGWLQLWVQAAAATSNMGMFLAEMSSDSFQLLGMAELGILPEIFAQRS-RYGTPL 346
Query: 65 VGILATAAITLAMSFTSFDTIVASANFLYSLGMLLEFAAFV 105
+GIL +A+ L +S SF I+A+ N LY GM+LEF AFV
Sbjct: 347 LGILFSASGVLLLSGLSFQEIIAAENLLYCGGMILEFIAFV 387
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,731,068
Number of extensions: 74450
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 5
Length of query: 207
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 113
Effective length of database: 8,529,465
Effective search space: 963829545
Effective search space used: 963829545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 109 (46.6 bits)