BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0369800 Os03g0369800|AK064875
         (275 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0369800  Similar to Novel plant SNARE 13 (AtNPSN13)          565   e-161
Os07g0637400  Similar to Novel plant SNARE 12 (AtNPSN12)          424   e-119
Os06g0715100  Similar to Novel plant SNARE 11 (AtNPSN11)          246   2e-65

>Os03g0369800 Similar to Novel plant SNARE 13 (AtNPSN13)
          Length = 275

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 1   MASDVPMSPELEQIDGEVQDIFRALQNGFQKMDKIKDSSRQAKQLEDLTAKMKECKRLIK 60
           MASDVPMSPELEQIDGEVQDIFRALQNGFQKMDKIKDSSRQAKQLEDLTAKMKECKRLIK
Sbjct: 1   MASDVPMSPELEQIDGEVQDIFRALQNGFQKMDKIKDSSRQAKQLEDLTAKMKECKRLIK 60

Query: 61  EFDRILKDEESNNPPEVHKQLNDRKQYMIKELNSYVTLRKTYQSSLGNNNKRVELFDMGA 120
           EFDRILKDEESNNPPEVHKQLNDRKQYMIKELNSYVTLRKTYQSSLGNNNKRVELFDMGA
Sbjct: 61  EFDRILKDEESNNPPEVHKQLNDRKQYMIKELNSYVTLRKTYQSSLGNNNKRVELFDMGA 120

Query: 121 GSSEPAAEDNIQIASAMTNQQLMDAGREQMTQTDQAIDRSKMVVAQTIETGTQTASALSQ 180
           GSSEPAAEDNIQIASAMTNQQLMDAGREQMTQTDQAIDRSKMVVAQTIETGTQTASALSQ
Sbjct: 121 GSSEPAAEDNIQIASAMTNQQLMDAGREQMTQTDQAIDRSKMVVAQTIETGTQTASALSQ 180

Query: 181 QTEQMKRIGNELDTVHFSLKKASQLVKEIGRQVATDKCIMALLFLIVCGVIAIIVVKIVN 240
           QTEQMKRIGNELDTVHFSLKKASQLVKEIGRQVATDKCIMALLFLIVCGVIAIIVVKIVN
Sbjct: 181 QTEQMKRIGNELDTVHFSLKKASQLVKEIGRQVATDKCIMALLFLIVCGVIAIIVVKIVN 240

Query: 241 PHNKNIRDIPGLAPPAQNFQISNRRLLSVEIIRGL 275
           PHNKNIRDIPGLAPPAQNFQISNRRLLSVEIIRGL
Sbjct: 241 PHNKNIRDIPGLAPPAQNFQISNRRLLSVEIIRGL 275



>Os07g0637400 Similar to Novel plant SNARE 12 (AtNPSN12)
          Length = 266

 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/276 (80%), Positives = 246/276 (89%), Gaps = 11/276 (3%)

Query: 1   MASDVPMSPELEQIDGEVQDIFRALQNGFQKMDKIKDSSRQAKQLEDLTAKMKECKRLIK 60
           MASDVPMSPELEQ+DGE+QDIFRALQNGFQKMDKIKDS+RQ+KQLEDLT KM+ECKRLIK
Sbjct: 1   MASDVPMSPELEQVDGEIQDIFRALQNGFQKMDKIKDSNRQSKQLEDLTGKMRECKRLIK 60

Query: 61  EFDRILKDEESNNPPEVHKQLNDRKQYMIKELNSYVTLRKTYQSSLGNNNKRVELFDMGA 120
           EFDRILK++E  N  +V+KQLND+KQ MIKELNSYVTLRKTYQSSLGN  KR+ELFD G 
Sbjct: 61  EFDRILKEDEKKNSADVNKQLNDKKQLMIKELNSYVTLRKTYQSSLGN--KRIELFDTG- 117

Query: 121 GSSEPAAEDN-IQIASAMTNQQLMDAGREQMTQTDQAIDRSKMVVAQTIETGTQTASALS 179
             ++  AEDN +Q+AS M+NQQLMDAGR+QM QTDQ I+RSK VVAQT+E G+QTA+ALS
Sbjct: 118 --NDQVAEDNTVQMASEMSNQQLMDAGRKQMDQTDQVIERSKKVVAQTVEVGSQTAAALS 175

Query: 180 QQTEQMKRIGNELDTVHFSLKKASQLVKEIGRQVATDKCIMALLFLIVCGVIAIIVVKIV 239
           QQTEQMKRIGNELD+VHFSLKKASQ+VKEIGRQVATDKCIMA LFLIVCGVIAIIVVKIV
Sbjct: 176 QQTEQMKRIGNELDSVHFSLKKASQMVKEIGRQVATDKCIMAFLFLIVCGVIAIIVVKIV 235

Query: 240 NPHNKNIRDIPGLAPPAQNFQISNRRLLSVEIIRGL 275
           NPHNKNIRDIPGLAPPAQ     NR+LLS+E    L
Sbjct: 236 NPHNKNIRDIPGLAPPAQ-----NRKLLSIESFGSL 266



>Os06g0715100 Similar to Novel plant SNARE 11 (AtNPSN11)
          Length = 206

 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/204 (60%), Positives = 159/204 (77%), Gaps = 5/204 (2%)

Query: 7   MSPELEQIDGEVQDIFRALQNGFQKMDKIKDSSRQAKQLEDLTAKMKECKRLIKEFDRIL 66
           ++PEL +IDG++ DI RALQNGFQK+DKIKD++R+++QLE+LT KM++CKRLIK+F+R++
Sbjct: 6   VNPELAEIDGQIGDILRALQNGFQKLDKIKDANRRSRQLEELTDKMRDCKRLIKDFERVV 65

Query: 67  KDEESNNPPEVHKQLNDRKQYMIKELNSYVTLRKTYQSSLGNNNKRVELFDMGAGSSEPA 126
           KD   +  PE  + L+DRKQ MIKELNSYV L+K Y S     NKRV+LFD G    +  
Sbjct: 66  KDMAGSTDPETARMLHDRKQSMIKELNSYVALKKQYASE----NKRVDLFD-GPSVEDGF 120

Query: 127 AEDNIQIASAMTNQQLMDAGREQMTQTDQAIDRSKMVVAQTIETGTQTASALSQQTEQMK 186
            E+N+ +AS MTNQQLMD G + M +TDQAI RSK  V +TI  GT+TA+AL  QTEQM 
Sbjct: 121 GEENVLLASNMTNQQLMDQGNQLMDETDQAIARSKQTVQETINVGTETAAALKSQTEQMS 180

Query: 187 RIGNELDTVHFSLKKASQLVKEIG 210
           RI NELD++HFS+KKASQ+VKEIG
Sbjct: 181 RIVNELDSIHFSIKKASQMVKEIG 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,665,813
Number of extensions: 266111
Number of successful extensions: 1120
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 3
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)