BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0356900 Os03g0356900|J065046L22
(325 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0356900 tRNA isopentenyltransferase family protein 476 e-135
Os03g0358900 330 8e-91
Os05g0312000 209 3e-54
Os03g0810100 Similar to TRNA isopentenyl transferase-like p... 194 7e-50
Os07g0211700 176 2e-44
Os05g0551700 tRNA isopentenyltransferase family protein 132 5e-31
Os01g0688300 113 1e-25
Os07g0190033 100 1e-21
Os01g0968700 tRNA isopentenyltransferase family protein 84 2e-16
Os06g0729800 tRNA isopentenyltransferase family protein 77 1e-14
>Os03g0356900 tRNA isopentenyltransferase family protein
Length = 325
Score = 476 bits (1226), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/325 (76%), Positives = 247/325 (76%)
Query: 1 MEYHVGGVIGQSPKPKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITN 60
MEYHVGGVIGQSPKPKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITN
Sbjct: 1 MEYHVGGVIGQSPKPKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITN 60
Query: 61 KVTEEERAGVPHHLLGVLHPDADFTAEDFXXXXXXXXXXXXXXXXXXXXXXXSNTYVEAL 120
KVTEEERAGVPHHLLGVLHPDADFTAEDF SNTYVEAL
Sbjct: 61 KVTEEERAGVPHHLLGVLHPDADFTAEDFRREAAAAVARVLAAGRLPVVAGGSNTYVEAL 120
Query: 121 VEGGGGAFRAAHDCLFLWTDVAPGLLRWYTAARVDDMVRRGLVGEARAGFVDGAGAADYY 180
VEGGGGAFRAAHDCLFLWTDVAPGLLRWYTAARVDDMVRRGLVGEARAGFVDGAGAADYY
Sbjct: 121 VEGGGGAFRAAHDCLFLWTDVAPGLLRWYTAARVDDMVRRGLVGEARAGFVDGAGAADYY 180
Query: 181 TRGVRRAIGIPEMHGYLLAERSXXXXXXXXXXXXXXXXXVREIKANTYRLAATQVAKIRR 240
TRGVRRAIGIPEMHGYLLAERS VREIKANTYRLAATQVAKIRR
Sbjct: 181 TRGVRRAIGIPEMHGYLLAERSGGEAADDGELAAMLDGAVREIKANTYRLAATQVAKIRR 240
Query: 241 LSALDGWXXXXXXXXXXXXXMAEGAPHRETWEAVVWKPCEEMVGRFLEXXXXXXXXXXXX 300
LSALDGW MAEGAPHRETWEAVVWKPCEEMVGRFLE
Sbjct: 241 LSALDGWDVRRVDATVVVARMAEGAPHRETWEAVVWKPCEEMVGRFLEASAAVDDDDNAA 300
Query: 301 XXXXXXXXXXXXXCRLRAQLVQLQY 325
CRLRAQLVQLQY
Sbjct: 301 AGSPAALAPMTAACRLRAQLVQLQY 325
>Os03g0358900
Length = 328
Score = 330 bits (846), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 186/279 (66%), Positives = 196/279 (70%), Gaps = 6/279 (2%)
Query: 12 SPKPKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITNKVTEEERAGVP 71
S KPKV+FVLGATATGKSKLAI +A RF GEVINSDKIQ HDGFP+ITNKVT+EERAGV
Sbjct: 15 STKPKVIFVLGATATGKSKLAIRLAARFDGEVINSDKIQAHDGFPVITNKVTDEERAGVA 74
Query: 72 HHLLGVLHPDADFTAEDFXXXXXXXXXXXXXXXXXXXXXXXSNTYVEALVEGGGGAFRAA 131
HHLLG + PDADFTAEDF SN YVEALV GGGGAF AA
Sbjct: 75 HHLLGGVSPDADFTAEDFRREAAAAVARVHAAGRLPVVAGGSNIYVEALVAGGGGAFLAA 134
Query: 132 HDCLFLWTDVAPGLLRWYTAARVDDMVRRGLVGEARAGFVDGAGAADYYTRGVRRAIGIP 191
+DCLFLWTDVAP LLRWYTAARVDDMVRRGLVGEARAGF GA YTRGVRRAIG+P
Sbjct: 135 YDCLFLWTDVAPDLLRWYTAARVDDMVRRGLVGEARAGFDAGAD----YTRGVRRAIGLP 190
Query: 192 EMHGYLLAERS--XXXXXXXXXXXXXXXXXVREIKANTYRLAATQVAKIRRLSALDGWXX 249
EMHGYLLAER VREIK NT+RL +QVAKIRRLSAL GW
Sbjct: 191 EMHGYLLAEREGGAGAEDDDDLLAGMLEAAVREIKDNTFRLTVSQVAKIRRLSALPGWDV 250
Query: 250 XXXXXXXXXXXMAEGAPHRETWEAVVWKPCEEMVGRFLE 288
MAEGAPH ETW VVW+PCEEMV RFLE
Sbjct: 251 RRVDATAVVARMAEGAPHGETWREVVWEPCEEMVSRFLE 289
>Os05g0312000
Length = 341
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/236 (50%), Positives = 142/236 (60%), Gaps = 6/236 (2%)
Query: 14 KPKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITNKVTEEERAGVPHH 73
K KVV V+GATATGKSKLAI +A RFGGEVINSDKIQVHDG ++TNKVT+EERAGVPHH
Sbjct: 8 KGKVVVVMGATATGKSKLAIDLALRFGGEVINSDKIQVHDGLDVVTNKVTDEERAGVPHH 67
Query: 74 LLGVLHPDADFTAEDFXXXXXXXXXXXXXXXXXXXXXXXSNTYVEALVEGGGGAFRAAHD 133
L+G + PDAD+ +DF SN Y+EAL++G GG+FR H+
Sbjct: 68 LIGGVPPDADYGVDDFRRDAARAVASVLARGRVPVIAGGSNRYLEALLDGEGGSFRERHE 127
Query: 134 CLFLWTDVAPGLLRWYTAARVDDMVRRGLVGEARAGF-VDGAGAADYYTRGVRRAIGIPE 192
FLW D L Y RVD MV +GLVGE R F +D A Y+RG+RR+IG+PE
Sbjct: 128 LCFLWVDSRAPALHRYVRHRVDRMVEQGLVGEVRGLFRLDDAD----YSRGIRRSIGVPE 183
Query: 193 MHGYLLAERS-XXXXXXXXXXXXXXXXXVREIKANTYRLAATQVAKIRRLSALDGW 247
M YL E + V EIKANT+ LA Q+ KI RL L GW
Sbjct: 184 MDAYLRQEATGALLTHGDKYKVALLASAVGEIKANTWSLARRQLRKIHRLRGLPGW 239
>Os03g0810100 Similar to TRNA isopentenyl transferase-like protein (Adenylate
isopentenyltransferase) (EC 2.5.1.27)
Length = 357
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 122/278 (43%), Positives = 148/278 (53%), Gaps = 10/278 (3%)
Query: 10 GQSPKPKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITNKVTEEERAG 69
G K K V V+GAT TGKS+LA+ +A RFGGEVINSDK+Q+H G ++TNKVTEEE AG
Sbjct: 47 GAGVKHKAVVVMGATGTGKSRLAVDLALRFGGEVINSDKMQIHSGLDVVTNKVTEEECAG 106
Query: 70 VPHHLLGVLHPDADFTAEDFXXXXXXXXXXXXXXXXXXXXXXXSNTYVEALVEGGGGAFR 129
VPHHL+ V PD +FTA DF SN+YVE LVEG G AFR
Sbjct: 107 VPHHLISVARPDDEFTAADFRREAARAAAGAVERGRLPIIAGGSNSYVEELVEGDGRAFR 166
Query: 130 AAHDCLFLWTDVAPGLLRWYTAARVDDMVRRGLVGEARAGFVDGAGAADYYTRGVRRAIG 189
++C FLW DV +LR + A RVD+M RRGLV E A F Y+RG+ RAIG
Sbjct: 167 ERYECCFLWVDVDLEVLRGFVARRVDEMCRRGLVREVAAAF---DPRRTDYSRGIWRAIG 223
Query: 190 IPEMHGYLLAERSXXXXXXXXXXXXXXXXXVREIKANTYRLAATQVAKIRRLSALDGWXX 249
+PE+ YL RS V EIK NT+RLA Q KI RL + W
Sbjct: 224 VPELDAYL---RSRGDGADEEERARMLAAAVAEIKLNTFRLACRQHRKIERLDRM--WRA 278
Query: 250 XXXXXXXXXXXMAEGAPHRETWEAVVWKPCEEMVGRFL 287
A + W+ +V PC + V FL
Sbjct: 279 RRVDATEVFRRRGHAAD--DAWQRLVAAPCIDAVRSFL 314
>Os07g0211700
Length = 347
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/274 (41%), Positives = 142/274 (51%), Gaps = 10/274 (3%)
Query: 14 KPKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITNKVTEEERAGVPHH 73
K K V V+GAT TGK++LA+ +A +FGGEVIN+DK+Q+H G + TNK T +ERAGVPHH
Sbjct: 51 KHKAVVVMGATGTGKTRLAVDLALQFGGEVINADKLQLHRGLDVATNKATADERAGVPHH 110
Query: 74 LLGVLHPDADFTAEDFXXXXXXXXXXXXXXXXXXXXXXXSNTYVEALVEGGGGAFRAAHD 133
L+GV HPD +FTA DF SN+Y+E LV+G AFR +D
Sbjct: 111 LIGVAHPDEEFTAADFRRAASRAAAAVAARGALPIIAGGSNSYIEELVDGDRRAFRDRYD 170
Query: 134 CLFLWTDVAPGLLRWYTAARVDDMVRRGLVGEARAGFVDGAGAADYYTRGVRRAIGIPEM 193
C FLW DV +L + RVDDM RG+V E A F D Y+RGV RAIG+PE+
Sbjct: 171 CCFLWVDVQLPVLHGFVGRRVDDMCGRGMVAEIEAAF--DPDRTD-YSRGVWRAIGVPEL 227
Query: 194 HGYLLAERSXXXXXXXXXXXXXXXXXVREIKANTYRLAATQVAKIRRLSALDGWXXXXXX 253
YL RS + +IKANT L+ Q AKI RL L W
Sbjct: 228 DAYL---RSCAAAGGEEERARLLANAIEDIKANTRWLSCRQRAKIVRLDRL--WRIRRVD 282
Query: 254 XXXXXXXMAEGAPHRETWEAVVWKPCEEMVGRFL 287
G E WE V P + V FL
Sbjct: 283 ATEAFRR--RGGAANEAWERHVAAPSIDTVRSFL 314
>Os05g0551700 tRNA isopentenyltransferase family protein
Length = 360
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 119/249 (47%), Gaps = 30/249 (12%)
Query: 16 KVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITNKVTEEERAGVPHHLL 75
++V ++GAT TGK+KL+I A+ GGEV+N+DKIQ++DG + TNKV+ +R GVPHHLL
Sbjct: 34 RMVVIVGATGTGKTKLSIDAAKVIGGEVVNADKIQLYDGLDVTTNKVSLADRRGVPHHLL 93
Query: 76 GVLHPDA-DFTAEDFXXXXXXXXXXXXXXXXXXXXXXXSNTYVEALV-----EGGGGAFR 129
G + P+A + F SN+ + AL+ G F
Sbjct: 94 GAIRPEAGELPPSSFRSLAAATAASIAARRLVPVIAGGSNSLIHALLADHFDASAGDPFS 153
Query: 130 AA-----------HDCLFLWTDVAPGLLRWYTAARVDDMVRRGLVGEARAGFVDGAGAAD 178
A C LW V LL Y RVDDMV G+V E R F A
Sbjct: 154 PAAAFRHYRPALRFPCCLLWVHVDEALLDEYLDRRVDDMVDAGMVEELREYFATTTAAER 213
Query: 179 YYTRGVRRAIGIPEMHGYLLAERSXXXXXXXXXXXXXXXXXVREIKANTYRLAATQVAKI 238
G+ +AIG+PE+ Y ++ + +IKANT LAA QV+KI
Sbjct: 214 AAHSGLGKAIGVPELGDYFAGRKT-------------FSEAIDDIKANTRVLAAAQVSKI 260
Query: 239 RRLSALDGW 247
RR+S GW
Sbjct: 261 RRMSDAWGW 269
>Os01g0688300
Length = 363
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 116/253 (45%), Gaps = 34/253 (13%)
Query: 13 PKPKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITNKVTEEERAGVPH 72
P +V ++GAT TGK+KL+I A+ GEV+N+DKIQ++DG + TNKV+ +R GVPH
Sbjct: 55 PSTGMVVIVGATGTGKTKLSIDAAQELAGEVVNADKIQLYDGLDVTTNKVSLADRRGVPH 114
Query: 73 HLLGVLHPDA-DFTAEDFXXXXXXXXXXXXXXXXXXXXXXXSNTYVEALVEGGGGAFRAA 131
HLLG + +A + F SN+ + AL+ AA
Sbjct: 115 HLLGAIRAEAGELPPSSFRSLAAAAAAGIASRGRVPVVAGGSNSLIHALL---ADPIDAA 171
Query: 132 HDCLFLWTDVA--PGL---------------LRWYTAARVDDMVRRGLVGEARAGFVDGA 174
F DV P L L Y RVDDMV G+V E F +
Sbjct: 172 PRDPFADADVGYRPALRFPCCLLWVDVDDDVLDEYLDRRVDDMVGEGMVEELEEYFATTS 231
Query: 175 GAADYYTRGVRRAIGIPEMHGYLLAERSXXXXXXXXXXXXXXXXXVREIKANTYRLAATQ 234
+ G+ +AIG+PE+ Y +S + EIKANT LAA Q
Sbjct: 232 ASERASHAGLGKAIGVPELGDYFAGRKS-------------LDAAIDEIKANTRVLAARQ 278
Query: 235 VAKIRRLSALDGW 247
V KIRR++ + GW
Sbjct: 279 VGKIRRMADVWGW 291
>Os07g0190033
Length = 446
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 14 KPKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITNKVTEEERAGVPHH 73
+ ++V ++GAT TGK++L+I IA+ GGEV+N+DK+Q++DG I TNKV+ ++R G+ HH
Sbjct: 227 RNELVVIIGATGTGKTRLSIEIAKAIGGEVVNADKMQIYDGLDITTNKVSLQDRCGISHH 286
Query: 74 LLGVLHPDA-DFTAEDFXXXXXXXXXXXXXXXXXXXXXXXSNTYVEAL---------VEG 123
L+ + +A DF F SN+ + L V+
Sbjct: 287 LIASIPRNAGDFPVSFFRSAAKTTINCIARRGHTPIVVGGSNSLIHGLLVDNFDSSIVDP 346
Query: 124 GGG---AFRAA--HDCLFLWTDVAPGLLRWYTAARVDDMVRRGLVGEARAGFVDGAGAAD 178
G ++R C FLW V +L Y RVDDMV GLV E F +
Sbjct: 347 FGQLEVSYRPTPRSQCCFLWVHVNEVILNEYLKHRVDDMVDAGLVEEIEEYFDTLSVNGH 406
Query: 179 YYTRGVRRAIGIPEMHGYL 197
G+ + IG+PE+ Y
Sbjct: 407 VPYVGLGKTIGVPELSEYF 425
>Os01g0968700 tRNA isopentenyltransferase family protein
Length = 462
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 10 GQSPKP------KVVFVLGATATGKSKLAISIAERFGG-EVINSDKIQVHDGFPIITNKV 62
SP P KVV V+GAT GKS+LA+ +A F G EV+++D +QV+ G ++TNKV
Sbjct: 23 SHSPPPPEKGLRKVVVVMGATGAGKSRLAVDLASHFAGVEVVSADSMQVYGGLDVLTNKV 82
Query: 63 TEEERAGVPHHLLGVLHPDADFTAEDF 89
E+ GVPHHLL V+ P +FT DF
Sbjct: 83 PLHEQKGVPHHLLSVIDPSVEFTCRDF 109
>Os06g0729800 tRNA isopentenyltransferase family protein
Length = 417
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%)
Query: 14 KPKVVFVLGATATGKSKLAISIAERFGGEVINSDKIQVHDGFPIITNKVTEEERAGVPHH 73
K KV+ + G T GK++LA+ +A+R GE+I++D +QV+ G + + K + +RA VPHH
Sbjct: 24 KNKVIVISGPTGAGKTRLALDLAKRLSGEIISADSVQVYRGLDVGSAKPSSSDRAAVPHH 83
Query: 74 LLGVLHPDADFTAEDF 89
L+ +LH D++A DF
Sbjct: 84 LIDILHASDDYSAGDF 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,783,510
Number of extensions: 309986
Number of successful extensions: 759
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 10
Length of query: 325
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 224
Effective length of database: 11,762,187
Effective search space: 2634729888
Effective search space used: 2634729888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)