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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0356900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : tRNA isopentenyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0162) R2 : 0.00551
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0542 (0.0341) R2dN8 : 0.00711 R2N8 : 0.00551
σ : 0.305
deviance : 42.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.19 0.298 2.89 -0.0115 0.00279 -0.286 0.231 1.03 0.0499 11.3 1 16 -- --
40.57 0.299 2.88 0.0298 0.0132 -0.22 0.307 -- 0.0623 12.8 1 16 -- --
40.13 0.297 2.89 -0.00215 0.0284 -0.289 -- 0.869 0.055 16.2 1 16 -- --
40.96 0.3 2.88 0.0416 0.0189 -0.219 -- -- 0.0642 15.9 1.096 16 -- --
40.17 0.297 2.89 -0.00109 -- -0.276 -- 0.856 0.0543 -- 1.006 16 -- --
42.22 0.305 2.88 0.0567 0.0311 -- -0.273 -- 0.0595 1.25 -- -- -- --
42.47 0.305 2.88 0.0655 0.0473 -- -- -- 0.0604 4.28 -- -- -- --
40.98 0.299 2.88 0.0419 -- -0.211 -- -- 0.0636 -- 1.056 14 -- --
41.01 0.3 2.88 -- 0.0193 -0.223 -- -- 0.0596 16 1.1 16 -- --
42.59 0.305 2.88 0.0674 -- -- -- -- 0.0617 -- -- -- -- --
42.58 0.305 2.88 -- 0.0485 -- -- -- 0.0531 4.25 -- -- -- --
41.02 0.299 2.88 -- -- -0.214 -- -- 0.059 -- 1.056 14 -- --
42.71 0.305 2.88 -- -- -- -- -- 0.0542 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.36 wind 1.0 30 < th dose dependent rect. 2 1
2 37.43 wind 1.0 10 < th dose independent rect. 2 1
13 37.52 humidity 90.0 30 > th dose independent rect. 2 1
17 37.53 temperature 10.0 30 > th dose independent rect. 2 1
20 37.53 temperature 25.0 30 < th dose independent rect. 2 1
22 37.53 humidity 50.0 30 > th dose independent rect. 2 1
26 37.53 atmosphere 995.0 30 > th dose independent rect. 2 1
27 37.53 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 37.53 radiation 1.0 30 < th dose independent rect. 2 1
34 37.53 precipitation 0.1 30 < th dose independent rect. 2 1
35 37.53 temperature 10.0 30 > th dose independent rect. 3 23
37 37.53 temperature 10.0 30 > th dose dependent rect. 2 1
40 37.53 humidity 50.0 30 > th dose dependent rect. 2 1
44 37.53 atmosphere 1015.0 30 < th dose dependent rect. 2 1
45 37.53 radiation 1.0 30 < th dose dependent rect. 2 1
50 37.53 precipitation 0.1 30 < th dose dependent rect. 2 1
56 37.54 temperature 30.0 30 < th dose dependent rect. 2 1
57 37.54 atmosphere 995.0 30 > th dose dependent rect. 2 1
101 37.63 wind 9.0 30 < th dose independent rect. 3 23
102 37.64 wind 1.0 30 > th dose independent rect. 2 1
105 37.69 atmosphere 1000.0 30 > th dose independent rect. 3 23
111 37.78 precipitation 0.1 30 < th dose independent rect. 3 23
112 37.78 precipitation 0.1 30 < th dose dependent rect. 3 23
123 38.14 radiation 1.0 14400 < th dose dependent rect. 3 1
124 38.15 wind 9.0 1440 < th dose independent rect. 3 1
125 38.15 temperature 10.0 1440 > th dose independent rect. 3 1
128 38.15 temperature 30.0 1440 < th dose independent rect. 3 1
132 38.15 humidity 50.0 1440 > th dose independent rect. 3 1
141 38.15 atmosphere 995.0 1440 > th dose independent rect. 3 1
142 38.15 radiation 1.0 1440 < th dose independent rect. 3 1
162 38.15 temperature 10.0 1440 > th dose independent rect. 4 23
165 38.15 radiation 1.0 1440 < th dose dependent rect. 3 1
196 38.72 wind 1.0 10 < th dose independent rect. 15 12
210 38.82 wind 1.0 10 < th dose independent rect. 7 20
212 38.84 humidity 50.0 30 > th dose independent rect. 3 23
225 39.05 atmosphere 1000.0 10 < th dose independent rect. 7 1
232 39.05 atmosphere 1000.0 10 < th dose dependent rect. 7 1
240 39.06 wind 1.0 10 < th dose independent rect. 7 1
241 39.06 humidity 70.0 10 < th dose independent rect. 7 1
302 39.06 wind 1.0 10 < th dose dependent rect. 7 1
303 39.06 humidity 70.0 10 < th dose dependent rect. 7 1
385 39.20 wind 1.0 10 > th dose independent rect. 21 23
407 39.41 atmosphere 1015.0 30 < th dose independent rect. 3 23
460 39.60 wind 1.0 10 > th dose independent sin 16 NA
486 39.69 temperature 20.0 30 > th dose dependent rect. 20 7
503 39.84 humidity 90.0 90 < th dose independent rect. 2 1
514 39.88 radiation 20.0 4320 < th dose dependent rect. 21 1
517 39.89 temperature 20.0 30 > th dose independent rect. 20 1
518 39.89 humidity 90.0 30 < th dose independent rect. 20 1
519 39.89 atmosphere 1005.0 30 > th dose independent rect. 20 1
520 39.89 temperature 10.0 30 > th dose dependent rect. 20 1
522 39.89 atmosphere 995.0 30 > th dose dependent rect. 20 1
531 39.90 wind 1.0 30 > th dose independent rect. 20 1
532 39.90 wind 5.0 30 < th dose independent rect. 20 1
535 39.90 temperature 10.0 30 > th dose independent rect. 20 1
537 39.90 temperature 30.0 30 < th dose independent rect. 20 1
538 39.90 humidity 50.0 30 > th dose independent rect. 20 1
541 39.90 atmosphere 995.0 30 > th dose independent rect. 20 1
543 39.90 atmosphere 1010.0 30 < th dose independent rect. 20 1
545 39.90 radiation 1.0 30 < th dose independent rect. 20 1
550 39.90 precipitation 0.1 30 < th dose independent rect. 20 1
553 39.90 temperature 10.0 30 > th dose independent rect. 21 23
557 39.90 radiation 1.0 30 < th dose dependent rect. 20 1
563 39.90 precipitation 0.1 30 < th dose dependent rect. 20 1
568 39.91 wind 9.0 30 < th dose dependent rect. 20 1
569 39.91 humidity 50.0 30 > th dose dependent rect. 20 1
572 39.92 temperature 10.0 1440 > th dose independent rect. 21 1
575 39.92 temperature 30.0 1440 < th dose independent rect. 21 1
579 39.92 humidity 50.0 1440 > th dose independent rect. 21 1
585 39.92 atmosphere 995.0 1440 > th dose independent rect. 21 1
586 39.92 radiation 1.0 1440 < th dose independent rect. 21 1
606 39.92 temperature 10.0 1440 > th dose independent rect. 22 23
609 39.92 wind 1.0 30 > th dose dependent rect. 20 1
617 39.93 humidity 90.0 30 < th dose dependent rect. 20 1
619 39.94 atmosphere 1015.0 30 < th dose dependent rect. 20 1
622 39.95 wind 1.0 10 > th dose independent rect. 23 23
624 39.95 radiation 20.0 10 < th dose dependent rect. 3 23
626 39.96 wind 1.0 30 > th dose independent rect. 3 23
676 40.07 wind 1.0 10 < th dose independent sin 16 NA
678 40.07 temperature 30.0 30 < th dose dependent rect. 20 1
696 40.11 temperature 30.0 30 < th dose independent rect. 3 23
700 40.12 radiation 10.0 30 < th dose independent rect. 3 23
744 40.17 wind 1.0 10 > th dose independent rect. 23 21
755 40.19 atmosphere 1015.0 1440 < th dose independent rect. 3 1
765 40.22 wind 1.0 10 > th dose independent rect. 16 15
766 40.22 wind 9.0 30 < th dose independent rect. 21 23
776 40.25 radiation 30.0 10 > th dose independent rect. 7 1
808 40.26 temperature 25.0 270 > th dose independent rect. 18 9
831 40.31 wind 9.0 720 < th dose independent rect. 3 8
834 40.32 atmosphere 1015.0 720 < th dose independent rect. 3 8
840 40.33 wind 1.0 10 > th dose independent no NA NA
881 40.36 radiation 40.0 720 < th dose independent rect. 15 8
882 40.36 wind 1.0 30 > th dose dependent rect. 2 1
885 40.37 temperature 15.0 720 > th dose independent rect. 3 8
898 40.38 atmosphere 995.0 720 > th dose independent rect. 3 8
900 40.38 temperature 10.0 720 > th dose independent rect. 11 16
910 40.40 temperature 10.0 720 > th dose independent rect. 15 8
911 40.40 temperature 10.0 720 > th dose independent rect. 23 16
925 40.44 wind 1.0 10 > th dose independent rect. 14 17
938 40.47 temperature 25.0 30 > th dose dependent rect. 20 3
955 40.49 wind 1.0 10 > th dose independent rect. 23 10
959 40.50 temperature 25.0 270 > th dose independent rect. 22 5
960 40.50 humidity 50.0 720 > th dose independent rect. 3 8
990 40.56 wind 1.0 10 > th dose independent rect. 23 12
991 40.56 wind 1.0 10 > th dose independent rect. 12 23