FiT-DB / Search/ Help/ Sample detail

Os01g0968700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : tRNA isopentenyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.67 (0.0171) R2 : 0.107
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.267 (0.0361) R2dN8 : 0.138 R2N8 : 0.107
σ : 0.323
deviance : 47.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.57 0.284 8.64 -0.244 0.259 0.203 -0.667 1.15 0.278 2.05 0.4106 5311 -- --
36.38 0.281 8.66 -0.315 0.267 0.505 -0.686 -- 0.298 2.09 0.4557 13310 -- --
38.19 0.288 8.64 -0.219 0.261 0.171 -- 1.22 0.278 2.51 0.4066 5298 -- --
37.61 0.286 8.67 -0.328 0.264 0.484 -- -- 0.287 2.37 0.7833 17359 -- --
42.23 0.303 8.64 -0.194 -- 0.145 -- 1.33 0.285 -- 0.4256 5298 -- --
41.73 0.303 8.67 -0.14 0.272 -- -0.586 -- 0.244 2.08 -- -- -- --
42.98 0.307 8.67 -0.123 0.276 -- -- -- 0.247 2.5 -- -- -- --
42.25 0.303 8.66 -0.279 -- 0.491 -- -- 0.308 -- 0.4605 13318 -- --
38.97 0.291 8.65 -- 0.276 0.412 -- -- 0.355 2.34 0.2965 16954 -- --
47.44 0.322 8.67 -0.111 -- -- -- -- 0.254 -- -- -- -- --
43.38 0.308 8.67 -- 0.273 -- -- -- 0.261 2.49 -- -- -- --
43.48 0.307 8.65 -- -- 0.429 -- -- 0.348 -- 0.3103 13768 -- --
47.77 0.323 8.67 -- -- -- -- -- 0.267 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.62 precipitation 0.1 43200 > th dose dependent rect. 17 4
3 35.74 precipitation 0.1 43200 > th dose dependent rect. 15 3
8 35.98 temperature 20.0 14400 < th dose independent rect. 21 1
9 35.99 temperature 20.0 14400 > th dose independent rect. 20 2
16 36.17 radiation 20.0 43200 > th dose independent rect. 11 1
17 36.17 precipitation 0.1 43200 > th dose dependent rect. 13 5
19 36.20 precipitation 0.1 43200 > th dose dependent rect. 20 1
24 36.23 radiation 10.0 43200 > th dose independent rect. 7 7
25 36.23 precipitation 0.1 43200 > th dose dependent rect. 13 8
28 36.27 wind 9.0 43200 < th dose independent rect. 17 22
32 36.29 precipitation 0.1 43200 < th dose independent rect. 16 2
33 36.29 precipitation 0.1 43200 < th dose dependent rect. 16 2
34 36.30 precipitation 0.1 43200 < th dose independent rect. 19 2
35 36.30 wind 9.0 43200 < th dose independent rect. 20 19
36 36.30 precipitation 0.1 43200 < th dose dependent rect. 19 2
38 36.31 radiation 10.0 43200 > th dose independent rect. 7 4
40 36.32 precipitation 0.1 43200 > th dose independent rect. 16 2
41 36.32 wind 9.0 43200 > th dose independent rect. 17 22
46 36.36 wind 3.0 43200 > th dose dependent rect. 17 15
47 36.36 wind 7.0 43200 > th dose dependent rect. 17 23
48 36.37 precipitation 0.1 43200 > th dose independent rect. 19 2
54 36.38 wind 9.0 43200 > th dose independent rect. 20 19
57 36.38 wind 7.0 43200 > th dose dependent rect. 19 21
62 36.40 humidity 80.0 43200 > th dose independent rect. 22 2
63 36.40 radiation 10.0 43200 > th dose independent rect. 10 4
67 36.40 wind 9.0 43200 > th dose dependent sin 14 NA
68 36.41 temperature 30.0 270 < th dose independent rect. 5 14
69 36.41 wind 9.0 43200 < th dose independent rect. 24 21
71 36.41 wind 7.0 43200 > th dose dependent rect. 3 18
76 36.42 wind 9.0 43200 < th dose independent rect. 12 20
83 36.42 wind 7.0 43200 > th dose dependent rect. 10 22
87 36.43 wind 9.0 43200 < th dose independent rect. 3 18
92 36.43 wind 9.0 43200 < th dose independent rect. 12 23
112 36.44 radiation 20.0 43200 < th dose dependent rect. 10 1
139 36.46 wind 9.0 43200 < th dose independent rect. 12 17
142 36.46 wind 9.0 43200 < th dose independent rect. 10 22
153 36.47 wind 9.0 43200 < th dose independent rect. 7 14
158 36.47 wind 9.0 43200 < th dose independent rect. 10 20
167 36.47 wind 7.0 43200 > th dose dependent no NA NA
170 36.47 wind 9.0 43200 > th dose dependent rect. 14 17
183 36.48 wind 9.0 43200 < th dose independent rect. 9 12
192 36.48 wind 9.0 43200 < th dose independent rect. 3 22
208 36.49 wind 9.0 43200 < th dose independent no NA NA
235 36.50 humidity 80.0 43200 < th dose independent rect. 22 1
261 36.51 wind 9.0 43200 < th dose independent sin 15 NA
264 36.51 wind 9.0 43200 < th dose independent rect. 10 15
268 36.51 wind 9.0 43200 < th dose independent rect. 7 18
278 36.51 wind 7.0 43200 > th dose dependent rect. 9 13
321 36.52 wind 3.0 43200 > th dose dependent rect. 16 17
328 36.53 wind 9.0 43200 < th dose independent rect. 12 13
368 36.54 wind 9.0 43200 > th dose independent rect. 4 17
380 36.55 wind 9.0 43200 > th dose independent sin 14 NA
395 36.55 wind 5.0 43200 < th dose independent rect. 16 16
403 36.55 wind 9.0 43200 > th dose independent rect. 12 23
420 36.56 wind 9.0 43200 > th dose independent rect. 12 21
421 36.56 wind 9.0 43200 > th dose independent rect. 10 22
453 36.57 wind 9.0 43200 > th dose independent rect. 10 20
497 36.59 wind 9.0 43200 > th dose independent no NA NA
500 36.59 wind 9.0 43200 > th dose independent rect. 7 14
537 36.60 wind 7.0 43200 > th dose dependent sin 23 NA
540 36.60 wind 7.0 43200 > th dose dependent rect. 4 12
548 36.61 wind 5.0 43200 < th dose independent rect. 17 14
568 36.61 wind 7.0 43200 > th dose dependent sin 21 NA
639 36.63 temperature 30.0 270 < th dose independent rect. 13 22
650 36.63 precipitation 0.1 14400 > th dose dependent rect. 4 18
654 36.64 humidity 60.0 4320 < th dose independent rect. 12 1
670 36.64 wind 3.0 43200 > th dose dependent sin 12 NA
675 36.64 wind 7.0 43200 > th dose dependent rect. 10 5
676 36.64 wind 7.0 43200 > th dose dependent rect. 9 7
689 36.65 wind 9.0 43200 < th dose independent rect. 14 1
710 36.65 precipitation 0.1 14400 > th dose dependent rect. 4 15
714 36.66 wind 5.0 43200 > th dose independent rect. 16 16
732 36.66 wind 9.0 43200 > th dose dependent rect. 14 11
740 36.67 humidity 60.0 4320 > th dose independent rect. 12 1
744 36.67 wind 7.0 43200 > th dose independent rect. 3 13
763 36.67 precipitation 0.1 14400 > th dose dependent rect. 10 12
765 36.67 precipitation 0.1 14400 > th dose dependent rect. 8 14
810 36.69 wind 9.0 43200 < th dose independent rect. 9 6
811 36.69 wind 9.0 43200 < th dose independent rect. 14 7
872 36.70 wind 5.0 43200 > th dose independent rect. 17 14
891 36.70 wind 9.0 43200 > th dose dependent rect. 14 7
901 36.71 wind 7.0 43200 > th dose independent sin 1 NA
904 36.71 wind 5.0 14400 > th dose independent rect. 7 2
943 36.72 wind 5.0 43200 > th dose independent rect. 15 19
956 36.72 precipitation 0.1 14400 > th dose dependent rect. 8 11