Os05g0551700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA isopentenyltransferase family protein.
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Os05g0551700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA isopentenyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 413.79 | 0.956 | 5.5 | -0.971 | 3.45 | -3.3 | -0.999 | 4.07 | -0.962 | 10.3 | 24.9 | 6126 | 20.7 | -- |
| 421.95 | 0.957 | 5.53 | -1.08 | 3.32 | -3.82 | -1.87 | -- | -0.643 | 10 | 22.9 | 10000 | 19.9 | -- |
| 417.79 | 0.952 | 5.51 | -1 | 3.47 | -3.28 | -- | 4.02 | -0.965 | 10.3 | 24.93 | 6116 | 20.6 | -- |
| 421.71 | 0.956 | 5.56 | -1.22 | 3.41 | -3.88 | -- | -- | -0.668 | 10 | 22.9 | 10010 | 18.9 | -- |
| 968.36 | 1.45 | 5.31 | 0.0185 | -- | -3.82 | -- | 5.29 | 0.00136 | -- | 25.6 | 2494 | 18.9 | -- |
| 727.68 | 1.26 | 5.88 | -3.83 | 3.44 | -- | -0.875 | -- | -2.16 | 10.3 | -- | -- | -- | -- |
| 730.73 | 1.27 | 5.88 | -3.87 | 3.45 | -- | -- | -- | -2.16 | 10.3 | -- | -- | -- | -- |
| 937.77 | 1.43 | 5.61 | -1.94 | -- | -4.66 | -- | -- | -0.571 | -- | 23.5 | 3780 | 17.1 | -- |
| 457.75 | 0.996 | 5.52 | -- | 3.53 | -4.04 | -- | -- | -0.514 | 10.3 | 21 | 23085 | 16.2 | -- |
| 1454.08 | 1.78 | 5.97 | -3.92 | -- | -- | -- | -- | -2.17 | -- | -- | -- | -- | -- |
| 1124.67 | 1.57 | 5.78 | -- | 3.47 | -- | -- | -- | -1.73 | 10.4 | -- | -- | -- | -- |
| 967.22 | 1.45 | 5.59 | -- | -- | -5.47 | -- | -- | -0.417 | -- | 23.03 | 3776 | 16.3 | -- |
| 1859.08 | 2.01 | 5.87 | -- | -- | -- | -- | -- | -1.74 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 423.04 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 2 | 424.65 | humidity | 90 | 14400 | < th | dose independent | rect. | 12 | 15 |
| 3 | 424.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 20 |
| 6 | 424.91 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 7 | 425.13 | humidity | 90 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 12 | 425.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 14 | 426.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 13 |
| 28 | 426.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 29 | 427.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 32 | 427.12 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 37 | 427.31 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 66 | 429.00 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 72 | 429.16 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 75 | 429.26 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 79 | 429.61 | humidity | 90 | 14400 | < th | dose independent | sin | 16 | NA |
| 95 | 430.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 118 | 431.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 133 | 431.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 176 | 433.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 191 | 433.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 195 | 433.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 205 | 434.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 208 | 434.44 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 209 | 434.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 215 | 434.68 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 221 | 434.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 228 | 434.96 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 17 |
| 252 | 435.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 273 | 435.73 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 324 | 436.77 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 345 | 437.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 391 | 437.95 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 421 | 438.49 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 13 |
| 434 | 438.64 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 473 | 439.24 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 488 | 439.55 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 540 | 440.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 575 | 440.56 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 580 | 440.59 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 14 |
| 609 | 440.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 619 | 440.85 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 632 | 440.94 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 639 | 441.00 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 671 | 441.24 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 712 | 441.69 | temperature | 25 | 14400 | < th | dose dependent | sin | 20 | NA |
| 794 | 442.39 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 816 | 442.60 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 874 | 443.05 | temperature | 25 | 14400 | < th | dose independent | sin | 22 | NA |
| 875 | 443.06 | humidity | 90 | 14400 | > th | dose independent | sin | 15 | NA |
| 876 | 443.06 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 896 | 443.26 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 903 | 443.31 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 914 | 443.40 | temperature | 15 | 14400 | > th | dose dependent | sin | 18 | NA |
| 915 | 443.41 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 964 | 443.72 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 997 | 443.90 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |