BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0347800 Os03g0347800|AK073756
(186 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0347800 Peptidyl-tRNA hydrolase family protein 350 4e-97
Os01g0693900 Peptidyl-tRNA hydrolase family protein 162 1e-40
Os01g0132800 Peptidyl-tRNA hydrolase family protein 155 1e-38
>Os03g0347800 Peptidyl-tRNA hydrolase family protein
Length = 186
Score = 350 bits (898), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 171/186 (91%), Positives = 171/186 (91%)
Query: 1 MAMTAASVFGSGGCLELLTSSKAMRGKLWTRLAPFISKRHAXXXXXXXXXXXXXXXVINP 60
MAMTAASVFGSGGCLELLTSSKAMRGKLWTRLAPFISKRHA VINP
Sbjct: 1 MAMTAASVFGSGGCLELLTSSKAMRGKLWTRLAPFISKRHASTSQTSLSSSSSSCSVINP 60
Query: 61 WLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKP 120
WLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKP
Sbjct: 61 WLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKP 120
Query: 121 QTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNGSVDFIIMC 180
QTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNGSVDFIIMC
Sbjct: 121 QTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNGSVDFIIMC 180
Query: 181 FNEVIC 186
FNEVIC
Sbjct: 181 FNEVIC 186
>Os01g0693900 Peptidyl-tRNA hydrolase family protein
Length = 250
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 95/120 (79%)
Query: 58 INPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLL 117
+ PWLFVGLGNPG+ YQ TRHNVGF+MID+ A+++GISL+ FKA+ G+G + P++L
Sbjct: 53 LKPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIML 112
Query: 118 AKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNGSVDFI 177
AKPQT+MN SGESVG L +Y+K+PLN+VLV +DD+DLP LRL PKGG+G HNG I
Sbjct: 113 AKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSII 172
>Os01g0132800 Peptidyl-tRNA hydrolase family protein
Length = 259
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Query: 59 NPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLA 118
PWL GLGNPG KY TRHNVGF+M+D A+ +GI++ K+L G G + VPVLL
Sbjct: 63 TPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLV 122
Query: 119 KPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNGSVDFII 178
KPQ+Y+N SGE++GPLAAYY++PL +LV +D+M LP GVLRLQ KGG+GRHNG + ++
Sbjct: 123 KPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNG-LQNVM 181
Query: 179 MCFN 182
C +
Sbjct: 182 ECLD 185
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.141 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,112,852
Number of extensions: 222452
Number of successful extensions: 412
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 3
Length of query: 186
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 91
Effective length of database: 12,075,471
Effective search space: 1098867861
Effective search space used: 1098867861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)