Os01g0132800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidyl-tRNA hydrolase family protein.
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Os01g0132800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidyl-tRNA hydrolase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.02 | 0.436 | 9.12 | 0.406 | 2.26 | -2.85 | 0.282 | 0.983 | -0.255 | 20.8 | 9.856 | 266 | 16.9 | 14.1 |
| 87.46 | 0.436 | 9.13 | 0.339 | 2.29 | -2.82 | 0.656 | -- | -0.267 | 20.8 | 9.671 | 263 | 16.9 | 14.2 |
| 86.08 | 0.432 | 9.12 | 0.423 | 2.29 | -2.84 | -- | 1.13 | -0.254 | 20.8 | 9.764 | 265 | 16.9 | 14.1 |
| 88.56 | 0.438 | 9.14 | 0.287 | 2.29 | -2.74 | -- | -- | -0.29 | 20.7 | 9.395 | 264 | 16.8 | 14.2 |
| 107.16 | 0.482 | 9.03 | 0.843 | -- | -3.9 | -- | 2.55 | -0.128 | -- | 3.949 | 791 | 16.2 | 14.8 |
| 150.9 | 0.576 | 9.2 | 0.0294 | 2.78 | -- | -0.227 | -- | -0.613 | 17.4 | -- | -- | -- | -- |
| 151.03 | 0.576 | 9.2 | 0.0298 | 2.78 | -- | -- | -- | -0.614 | 17.4 | -- | -- | -- | -- |
| 106.11 | 0.48 | 9.08 | 0.561 | -- | -3.82 | -- | -- | -0.312 | -- | 2.803 | 819 | 15.8 | 14.9 |
| 90.54 | 0.443 | 9.15 | -- | 2.29 | -2.68 | -- | -- | -0.332 | 20.6 | 9.144 | 265 | 16.8 | 14.2 |
| 552.58 | 1.1 | 9.16 | -0.0646 | -- | -- | -- | -- | -0.683 | -- | -- | -- | -- | -- |
| 151.05 | 0.575 | 9.2 | -- | 2.77 | -- | -- | -- | -0.617 | 17.4 | -- | -- | -- | -- |
| 108.03 | 0.484 | 9.1 | -- | -- | -3.85 | -- | -- | -0.431 | -- | -3.72 | 849 | 15.5 | 14.7 |
| 552.69 | 1.1 | 9.16 | -- | -- | -- | -- | -- | -0.675 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 5 | 90.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 7 | 91.83 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 16 |
| 18 | 94.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 47 | 97.47 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 5 |
| 67 | 98.69 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 3 |
| 78 | 99.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 81 | 99.40 | temperature | 10 | 10 | > th | dose dependent | sin | 10 | NA |
| 86 | 99.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 113 | 100.95 | temperature | 30 | 10 | < th | dose dependent | sin | 10 | NA |
| 119 | 101.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 193 | 102.79 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 19 |
| 205 | 102.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 242 | 103.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 14 |
| 258 | 104.05 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 21 |
| 267 | 104.20 | temperature | 15 | 720 | > th | dose dependent | sin | 14 | NA |
| 291 | 104.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 345 | 105.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 383 | 105.69 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 386 | 105.72 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 451 | 106.34 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 18 |