BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0132800 Os01g0132800|AK068422
(259 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38290.2 | chr5:15303491-15305381 FORWARD LENGTH=251 311 3e-85
AT5G16140.1 | chr5:5270308-5271517 REVERSE LENGTH=241 305 2e-83
AT5G19830.1 | chr5:6703383-6705125 FORWARD LENGTH=220 238 2e-63
AT1G18440.1 | chr1:6345994-6347686 FORWARD LENGTH=289 229 1e-60
>AT5G38290.2 | chr5:15303491-15305381 FORWARD LENGTH=251
Length = 250
Score = 311 bits (796), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 148/212 (69%), Positives = 174/212 (82%), Gaps = 2/212 (0%)
Query: 50 ASVP--DPAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKS 107
AS+P D EYTPWLI GLGNPG KY+GTRHN+GFEM+D IAR I+MNTIQSK+
Sbjct: 39 ASLPVSDNKLLKFEYTPWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKA 98
Query: 108 LLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQR 167
L+GIGS+GEVP+LLVKPQ Y+N+SGE++GPLAAYYQ+PLRHIL++YD+M L NGVLRLQ
Sbjct: 99 LVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQP 158
Query: 168 KGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALE 227
KGGH +HNGL+NV E L+ R PRLSIGIG+PPG MD +AFLLQKFS ER Q+D LE
Sbjct: 159 KGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLE 218
Query: 228 QGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259
QGV+ V+TLV +GFS SI RFNL QKYKFH V
Sbjct: 219 QGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 250
>AT5G16140.1 | chr5:5270308-5271517 REVERSE LENGTH=241
Length = 240
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 141/200 (70%), Positives = 170/200 (85%)
Query: 60 AEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPV 119
EYTPWLI GLGNPG+KYHGTRHNVGFEM+D +AR EG+ MNTIQSK+L+GIG+I +VP+
Sbjct: 41 VEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPI 100
Query: 120 LLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQN 179
LL KPQ+Y+N+SGE++G LA++Y+VPLRHIL++YDEM+LPNGVLRLQ KGG G HNG+++
Sbjct: 101 LLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKS 160
Query: 180 VMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLK 239
VM LD R PRLSIGIG PPG MD +AFLLQKFS E+ QI+ ALEQG +AV+TLVL
Sbjct: 161 VMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLN 220
Query: 240 GFSGSIERFNLVQKYKFHSV 259
GF+ I RFNLVQKYKFH V
Sbjct: 221 GFNQGISRFNLVQKYKFHKV 240
>AT5G19830.1 | chr5:6703383-6705125 FORWARD LENGTH=220
Length = 219
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/194 (56%), Positives = 143/194 (73%)
Query: 62 YTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLL 121
+ PWL GLGNPG KY GTRHN+GFEM+D A GI MN + K+++G G + ++PV+L
Sbjct: 16 HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75
Query: 122 VKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVM 181
KPQ+Y+N SGE+ GPLAAYY++PL +LV++D+M LP GVLRLQ KGGHG HNGL++VM
Sbjct: 76 AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135
Query: 182 ECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGF 241
+RE RL IGIG PPG+MD +AFLLQKFS R ++D AL +GVDA++ ++ K F
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195
Query: 242 SGSIERFNLVQKYK 255
S FN+ QKYK
Sbjct: 196 GESWRLFNVEQKYK 209
>AT1G18440.1 | chr1:6345994-6347686 FORWARD LENGTH=289
Length = 288
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 101/198 (51%), Positives = 148/198 (74%), Gaps = 3/198 (1%)
Query: 55 PAARPAE---YTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGI 111
P+++P PWLI GLGNPG KY GTRHNVGFEMVD +A EGI+MNT+ K+L G
Sbjct: 82 PSSKPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGK 141
Query: 112 GSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGH 171
G IG +P++L KPQ+++N SGE++G + ++Y++PL+ +LV+YD++ LP G LRL KGGH
Sbjct: 142 GVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGH 201
Query: 172 GRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVD 231
G HNG++++++ L SR+ PRL IGIG PPGKMDT F+L++F+ +E+ ++D + G++
Sbjct: 202 GGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLE 261
Query: 232 AVRTLVLKGFSGSIERFN 249
A+R L+L+GF+ S N
Sbjct: 262 AIRILLLEGFNKSATFVN 279
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,118,444
Number of extensions: 199541
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 4
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)