Os01g0693900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidyl-tRNA hydrolase family protein.
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Os01g0693900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidyl-tRNA hydrolase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.92 | 0.235 | 11.6 | -1.45 | 0.437 | 0.147 | -0.334 | 2.32 | -0.672 | 11.4 | 1004 | 11 | -- | -- |
| 25.31 | 0.236 | 11.6 | -1.55 | 0.427 | 0.583 | -0.298 | -- | -0.66 | 11.3 | 1003 | 71 | -- | -- |
| 25.39 | 0.236 | 11.6 | -1.47 | 0.438 | 0.173 | -- | 2.17 | -0.671 | 11.3 | 1004 | 11 | -- | -- |
| 25.67 | 0.238 | 11.6 | -1.56 | 0.429 | 0.588 | -- | -- | -0.662 | 11.3 | 1003 | 62 | -- | -- |
| 37.16 | 0.285 | 11.6 | -1.53 | -- | 0.43 | -- | 1.06 | -0.666 | -- | 1003 | 4 | -- | -- |
| 29.69 | 0.255 | 11.6 | -1.49 | 0.435 | -- | -0.303 | -- | -0.691 | 11.4 | -- | -- | -- | -- |
| 30.08 | 0.257 | 11.6 | -1.5 | 0.437 | -- | -- | -- | -0.692 | 11.4 | -- | -- | -- | -- |
| 37.17 | 0.285 | 11.7 | -1.58 | -- | 0.619 | -- | -- | -0.664 | -- | 1003 | 2 | -- | -- |
| 88.66 | 0.441 | 11.6 | -- | 0.45 | 0.264 | -- | -- | -0.508 | 11.6 | 1003 | 62 | -- | -- |
| 42.04 | 0.303 | 11.7 | -1.51 | -- | -- | -- | -- | -0.697 | -- | -- | -- | -- | -- |
| 89.57 | 0.443 | 11.6 | -- | 0.453 | -- | -- | -- | -0.525 | 11.6 | -- | -- | -- | -- |
| 101.02 | 0.47 | 11.6 | -- | -- | 0.286 | -- | -- | -0.491 | -- | 1006 | 38 | -- | -- |
| 102.48 | 0.473 | 11.6 | -- | -- | -- | -- | -- | -0.529 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.21 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 2 | 23.22 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 5 | 23.25 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 6 | 23.25 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 10 | 23.27 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 29 | 23.33 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 44 | 24.21 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 45 | 24.27 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 46 | 24.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 47 | 24.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 48 | 24.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 50 | 24.44 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 80 | 24.48 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 106 | 24.66 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 112 | 24.72 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 114 | 24.74 | temperature | 30.0 | 4320 | < th | dose independent | sin | 7 | NA |
| 127 | 24.77 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 22 |
| 141 | 24.79 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 10 |
| 149 | 24.80 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 6 |
| 160 | 24.81 | temperature | 30.0 | 4320 | > th | dose independent | sin | 7 | NA |
| 188 | 24.86 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 6 |
| 249 | 24.93 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 257 | 24.94 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 275 | 24.95 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 276 | 24.95 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 292 | 24.96 | atmosphere | 1005.0 | 10 | < th | dose dependent | no | NA | NA |
| 308 | 24.97 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 309 | 24.97 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 321 | 24.98 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 322 | 24.98 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 328 | 24.99 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 330 | 24.99 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 340 | 25.00 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 409 | 25.02 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 23 | 23 |
| 413 | 25.03 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 427 | 25.04 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 4 | 22 |
| 482 | 25.06 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 11 | 23 |
| 530 | 25.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 531 | 25.08 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 600 | 25.10 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 603 | 25.11 | temperature | 30.0 | 4320 | < th | dose independent | no | NA | NA |
| 604 | 25.11 | atmosphere | 1000.0 | 10 | > th | dose independent | no | NA | NA |
| 606 | 25.11 | atmosphere | 1000.0 | 10 | < th | dose independent | no | NA | NA |
| 684 | 25.11 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 735 | 25.12 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 746 | 25.13 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 751 | 25.13 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 752 | 25.13 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 753 | 25.13 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 760 | 25.14 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 17 |
| 762 | 25.14 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 19 | 23 |
| 766 | 25.14 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 13 | 23 |
| 776 | 25.15 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 1 | 23 |
| 779 | 25.15 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 11 | 23 |
| 782 | 25.15 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 15 | 23 |
| 787 | 25.16 | temperature | 30.0 | 4320 | > th | dose independent | no | NA | NA |
| 788 | 25.16 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 919 | 25.18 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 923 | 25.18 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |