BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0693900 Os01g0693900|AK099894
         (250 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0693900  Peptidyl-tRNA hydrolase family protein              418   e-117
Os01g0132800  Peptidyl-tRNA hydrolase family protein              216   1e-56
Os05g0549600  Peptidyl-tRNA hydrolase family protein              206   1e-53
Os03g0347800  Peptidyl-tRNA hydrolase family protein              163   1e-40

>Os01g0693900 Peptidyl-tRNA hydrolase family protein
          Length = 250

 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/250 (84%), Positives = 212/250 (84%)

Query: 1   MRLLSGASASRIXXXXXXXXXXXXXXXXVPXXXXXXXXXXXXXXXXXXXXXXLKPWLFVG 60
           MRLLSGASASRI                VP                      LKPWLFVG
Sbjct: 1   MRLLSGASASRIPCPLLSLARARARCLPVPASATACRAASSSAAAAAGDGGALKPWLFVG 60

Query: 61  LGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMN 120
           LGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMN
Sbjct: 61  LGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMN 120

Query: 121 ASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRD 180
           ASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRD
Sbjct: 121 ASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRD 180

Query: 181 FPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVN 240
           FPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVN
Sbjct: 181 FPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVN 240

Query: 241 TAQSSEMLNR 250
           TAQSSEMLNR
Sbjct: 241 TAQSSEMLNR 250



>Os01g0132800 Peptidyl-tRNA hydrolase family protein
          Length = 259

 Score =  216 bits (550), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 95/189 (50%), Positives = 139/189 (73%)

Query: 55  PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114
           PWL  GLGNPG  Y GTRHNVGFEM+D IA  EGI+++++Q K+++G G IG+ P++L K
Sbjct: 64  PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVK 123

Query: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINH 174
           PQ+++N SGE++G L +Y+++PL  +LVMYD++ LP   LRL  KGGHG HNG+++++  
Sbjct: 124 PQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMEC 183

Query: 175 LKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNK 234
           L  +R+ PRL IGIG PPGKMD   F+L+ F+ +E+ ++D A  +G++AVR + L+GF+ 
Sbjct: 184 LDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSG 243

Query: 235 SATYVNTAQ 243
           S    N  Q
Sbjct: 244 SIERFNLVQ 252



>Os05g0549600 Peptidyl-tRNA hydrolase family protein
          Length = 128

 Score =  206 bits (524), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 111/127 (87%)

Query: 124 ESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPR 183
           + V QLVSYFKIPL+QVLV+YDDLD+PFAKLRLLPKGGHGGHNG+RSIINHLKQ+RDFPR
Sbjct: 2   QVVAQLVSYFKIPLSQVLVIYDDLDIPFAKLRLLPKGGHGGHNGMRSIINHLKQSRDFPR 61

Query: 184 LRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQ 243
           LRIGIGRP GK+D   FVLR F ++EQEEL+   +R L+AVRIM LEGFNK AT+VNT Q
Sbjct: 62  LRIGIGRPTGKLDAIGFVLRSFTKEEQEELNLTINRSLQAVRIMLLEGFNKGATFVNTPQ 121

Query: 244 SSEMLNR 250
            SEMLN+
Sbjct: 122 PSEMLNK 128



>Os03g0347800 Peptidyl-tRNA hydrolase family protein
          Length = 186

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 95/120 (79%)

Query: 53  LKPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIML 112
           + PWLFVGLGNPG+ YQ TRHNVGF+MID+ A+++GISL+   FKA+ G+G +   P++L
Sbjct: 58  INPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLL 117

Query: 113 AKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSII 172
           AKPQT+MN SGESVG L +Y+K+PLN+VLV +DD+DLP   LRL PKGG+G HNG    I
Sbjct: 118 AKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNGSVDFI 177



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,093,813
Number of extensions: 291256
Number of successful extensions: 704
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 4
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)