BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0693900 Os01g0693900|AK099894
(250 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G18440.1 | chr1:6345994-6347686 FORWARD LENGTH=289 320 4e-88
AT5G19830.1 | chr5:6703383-6705125 FORWARD LENGTH=220 230 6e-61
AT5G16140.1 | chr5:5270308-5271517 REVERSE LENGTH=241 225 2e-59
AT5G38290.2 | chr5:15303491-15305381 FORWARD LENGTH=251 210 6e-55
>AT1G18440.1 | chr1:6345994-6347686 FORWARD LENGTH=289
Length = 288
Score = 320 bits (821), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 151/195 (77%), Positives = 173/195 (88%)
Query: 55 PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114
PWL VGLGNPGK YQGTRHNVGFEM+D +A+AEGIS++++ FKA+ GKG IG+ PIMLAK
Sbjct: 94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153
Query: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINH 174
PQTFMN SGESVGQ+VS++KIPL QVLV+YDDLDLPF KLRLLPKGGHGGHNG+RSII+
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213
Query: 175 LKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNK 234
LK +RDFPRLRIGIGRPPGKMD ANFVLR FNR+EQEELD F GLEA+RI+ LEGFNK
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273
Query: 235 SATYVNTAQSSEMLN 249
SAT+VNT +S E L+
Sbjct: 274 SATFVNTRKSMEQLS 288
>AT5G19830.1 | chr5:6703383-6705125 FORWARD LENGTH=220
Length = 219
Score = 230 bits (586), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 148/197 (75%)
Query: 54 KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLA 113
+PWLF+GLGNPG Y+GTRHN+GFEMIDV AE+ GI ++ + FKA++G+G + D P++LA
Sbjct: 17 RPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILA 76
Query: 114 KPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIIN 173
KPQT+MN SGES G L +Y+K+PLN+VLV++DD+ LP LRL KGGHG HNG++S++N
Sbjct: 77 KPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMN 136
Query: 174 HLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFN 233
H + NR+F RLRIGIG+PPG+MDP F+L+ F+ +E +D A G++A++++ + F
Sbjct: 137 HFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFG 196
Query: 234 KSATYVNTAQSSEMLNR 250
+S N Q + L +
Sbjct: 197 ESWRLFNVEQKYKHLKQ 213
>AT5G16140.1 | chr5:5270308-5271517 REVERSE LENGTH=241
Length = 240
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/189 (55%), Positives = 140/189 (74%)
Query: 55 PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114
PWL VGLGNPG Y GTRHNVGFEMIDV+A EG+ ++++Q KA++G G I D PI+LAK
Sbjct: 45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104
Query: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINH 174
PQT+MN SGESVG L S++++PL +L++YD++ LP LRL PKGG G HNGV+S++ H
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGH 164
Query: 175 LKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNK 234
L R+FPRL IGIG+PPG MD F+L+ F+ EQ++++ A +G EAV+ + L GFN+
Sbjct: 165 LDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQ 224
Query: 235 SATYVNTAQ 243
+ N Q
Sbjct: 225 GISRFNLVQ 233
>AT5G38290.2 | chr5:15303491-15305381 FORWARD LENGTH=251
Length = 250
Score = 210 bits (534), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 98/189 (51%), Positives = 133/189 (70%)
Query: 55 PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114
PWL VGLGNPG Y GTRHN+GFEMID IA A IS++++Q KA+VG G +G+ PI+L K
Sbjct: 55 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 114
Query: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINH 174
PQ +MN SGESVG L +Y++IPL +L++YDD+ L LRL PKGGH HNG++++ H
Sbjct: 115 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEH 174
Query: 175 LKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNK 234
L R +PRL IGIG PPG MD F+L+ F+ E++++D +G+E V+ + EGF+
Sbjct: 175 LNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSD 234
Query: 235 SATYVNTAQ 243
S + N Q
Sbjct: 235 SISRFNLGQ 243
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.140 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,466,253
Number of extensions: 180866
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 4
Length of query: 250
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 154
Effective length of database: 8,474,633
Effective search space: 1305093482
Effective search space used: 1305093482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)