BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0325600 Os03g0325600|AK063262
(328 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0325600 Homeodomain-like containing protein 323 1e-88
Os07g0684900 Homeodomain-like containing protein 122 5e-28
Os08g0242400 Similar to WUSCHEL-related homeobox 8 111 6e-25
Os05g0564500 Homeodomain-like containing protein 88 9e-18
Os07g0533100 83 3e-16
>Os03g0325600 Homeodomain-like containing protein
Length = 328
Score = 323 bits (828), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/328 (56%), Positives = 185/328 (56%)
Query: 1 MEGSSNSPDRQXXXXXXXXXXXXXXXXXXXXXXXXXEPVRSRWTPKPEQILILESIFNSG 60
MEGSSNSPDRQ EPVRSRWTPKPEQILILESIFNSG
Sbjct: 1 MEGSSNSPDRQSSGGSPPEERGGGGSGGGGGRSAAGEPVRSRWTPKPEQILILESIFNSG 60
Query: 61 MVNPPKDETVRIRKLLERFGAVGDANVFYWFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
MVNPPKDETVRIRKLLERFGAVGDANVFYWF
Sbjct: 61 MVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQRQMQAAAAAAAAAASSSS 120
Query: 121 XXXXXXXXXXXXXXVQVGLPPGAVVHTMAMGGSACQYEQQAXXXXXXXXXXXXXXXXXXX 180
VQVGLPPGAVVHTMAMGGSACQYEQQA
Sbjct: 121 PSANTSPAAASAATVQVGLPPGAVVHTMAMGGSACQYEQQASSSSSSGSTGGSSLGLFAH 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXPGLMXXXXXXXXXXXLFAISRQMGFVGSPRCXXX 240
PGLM LFAISRQMGFVGSPRC
Sbjct: 181 GAGASGAGGYLQASCGASASASSALAPGLMGDVVDSGGSDDLFAISRQMGFVGSPRCSPA 240
Query: 241 XXXXXXXXXXXXXXXXFYSCQLPAATITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTG 300
FYSCQLPAATITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTG
Sbjct: 241 SSPATPSSAATAAQQQFYSCQLPAATITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTG 300
Query: 301 ALLPVNDYGILMQSLQIGESYFLVARPP 328
ALLPVNDYGILMQSLQIGESYFLVARPP
Sbjct: 301 ALLPVNDYGILMQSLQIGESYFLVARPP 328
>Os07g0684900 Homeodomain-like containing protein
Length = 262
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF
Sbjct: 17 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 71
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 73/105 (69%), Gaps = 6/105 (5%)
Query: 222 LFAISRQMGFVGSPRCXXXXXXXXXXXXXXXXXXXFYSCQLPAATITVFINGVPMEMPRG 281
LFAISRQMG++ +YSCQ AT+TVFINGV E+PRG
Sbjct: 162 LFAISRQMGYMDG----GGGSSSSAAAGQHQQQQLYYSCQ--PATMTVFINGVATEVPRG 215
Query: 282 PIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGESYFLVAR 326
PIDLR+MFGQDVMLVHSTGALLP N+YGIL+ SLQ+GESYFLV R
Sbjct: 216 PIDLRSMFGQDVMLVHSTGALLPANEYGILLHSLQMGESYFLVTR 260
>Os08g0242400 Similar to WUSCHEL-related homeobox 8
Length = 284
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/55 (89%), Positives = 50/55 (90%)
Query: 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
EP RSRW PKPEQILILESIFNSGMVNP KDET RIR+LLERFGAV DANVFYWF
Sbjct: 38 EPARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWF 92
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 222 LFAISRQMGFVGSPRCXXXXXXXXXXXXXXXXXXXFYSCQLPAATITVFINGVPMEMPRG 281
LFAISRQMG + R + P TI VFINGV ++P G
Sbjct: 183 LFAISRQMGLMA--RHGGGDHHYSSYADSDATQLSYQ----PTGTIQVFINGVAYDVPSG 236
Query: 282 -PIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGESYFLVAR 326
+D+ FG+D MLVHS+G +LPV+++G+L+ SLQ+GE Y+LV++
Sbjct: 237 GALDMAGTFGRDAMLVHSSGEVLPVDEHGVLINSLQMGECYYLVSK 282
>Os05g0564500 Homeodomain-like containing protein
Length = 476
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 42/52 (80%)
Query: 40 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
+ RW P+PEQI ILE IFNSGMVNPP+DE RIR L+ +G VGDANVFYWF
Sbjct: 70 KPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWF 121
>Os07g0533100
Length = 306
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 42/52 (80%)
Query: 40 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
+ R P+PEQI ILE+IFNSGMVNPP+DE RIR L+ +G VGDANVFYWF
Sbjct: 134 KPRRNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWF 185
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,640,074
Number of extensions: 172923
Number of successful extensions: 299
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 8
Length of query: 328
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 227
Effective length of database: 11,762,187
Effective search space: 2670016449
Effective search space used: 2670016449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)