BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0304500 Os03g0304500|AK101290
(668 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0304500 Heat shock protein DnaJ, N-terminal domain con... 890 0.0
Os07g0689800 Heat shock protein DnaJ, N-terminal domain con... 557 e-159
Os01g0273500 Heat shock protein DnaJ, N-terminal domain con... 72 2e-12
>Os03g0304500 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 668
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/668 (73%), Positives = 489/668 (73%)
Query: 1 MAVSSPTSAPEKKRKWLLSNRKVIDKYLREARAILATAPXXXXXXXXXXXXXXXXXXXXS 60
MAVSSPTSAPEKKRKWLLSNRKVIDKYLREARAILATAP S
Sbjct: 1 MAVSSPTSAPEKKRKWLLSNRKVIDKYLREARAILATAPEAGGGDAVAALGLVDAALELS 60
Query: 61 PRMESALELRGRALLSLRRYRDVAEMLRDYIPSCAKTCXXXXXXXXXXXXXXXXXXXXXX 120
PRMESALELRGRALLSLRRYRDVAEMLRDYIPSCAKTC
Sbjct: 61 PRMESALELRGRALLSLRRYRDVAEMLRDYIPSCAKTCSGDDTLSSSTSSSLSSSGSGDL 120
Query: 121 XXISRAKLLSPDRHRSDAAAEPGAAVARSFRCFDISELKRRVLASLSKNPNTDTQWRYLV 180
ISRAKLLSPDRHRSDAAAEPGAAVARSFRCFDISELKRRVLASLSKNPNTDTQWRYLV
Sbjct: 121 GTISRAKLLSPDRHRSDAAAEPGAAVARSFRCFDISELKRRVLASLSKNPNTDTQWRYLV 180
Query: 181 LGQACFHLGLIEDAMVLLQTGRRLASAAFRRESVCLXXXXXXXXXXXXXXXXXXXGNTTK 240
LGQACFHLGLIEDAMVLLQTGRRLASAAFRRESVCL GNTTK
Sbjct: 181 LGQACFHLGLIEDAMVLLQTGRRLASAAFRRESVCLSEDSFSSSSPAAAVAPIPSGNTTK 240
Query: 241 SGSAFIIPAMESEAVSQLLAHVKXXXXXXXXXXXXXXXXXXXXXVRHFSKILEARRGVLP 300
SGSAFIIPAMESEAVSQLLAHVK VRHFSKILEARRGVLP
Sbjct: 241 SGSAFIIPAMESEAVSQLLAHVKLLLRRRTAAMAALDAGLPAEAVRHFSKILEARRGVLP 300
Query: 301 HPFAAACLVGRAAAFQAGGRPADAIADCNRALALDPAYIPALRARADLLQSVGALADCLR 360
HPFAAACLVGRAAAFQAGGRPADAIADCNRALALDPAYIPALRARADLLQSVGALADCLR
Sbjct: 301 HPFAAACLVGRAAAFQAGGRPADAIADCNRALALDPAYIPALRARADLLQSVGALADCLR 360
Query: 361 DLDHLKLLYDAALRDGKLPGPRWRPQGGVRYREIAGAHRKLTARIQGLRSRVAAGEACNI 420
DLDHLKLLYDAALRDGKLPGPRWRPQGGVRYREIAGAHRKLTARIQGLRSRVAAGEACNI
Sbjct: 361 DLDHLKLLYDAALRDGKLPGPRWRPQGGVRYREIAGAHRKLTARIQGLRSRVAAGEACNI 420
Query: 421 DYYALLGVRRGCTRSELERAHLLLTLKLKPDRAVVFGERLELVDEHRDLEAVRDQARMSA 480
DYYALLGVRRGCTRSELERAHLLLTLKLKPDRAVVFGERLELVDEHRDLEAVRDQARMSA
Sbjct: 421 DYYALLGVRRGCTRSELERAHLLLTLKLKPDRAVVFGERLELVDEHRDLEAVRDQARMSA 480
Query: 481 LLLYRMLQKGYSFIMSAVIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKQEATKQ 540
LLLYRMLQKGYSFIMSAVID VKQEATKQ
Sbjct: 481 LLLYRMLQKGYSFIMSAVIDEEAAERQRAREAAAAAAAAAAAAAAAAAAALAVKQEATKQ 540
Query: 541 ELAAPPMPEKPRQTESAPCXXXXXXXXXXXXXXXXXTVPSMMSRKXXXXXXXXXXXXXXX 600
ELAAPPMPEKPRQTESAPC TVPSMMSRK
Sbjct: 541 ELAAPPMPEKPRQTESAPCAKRSMASKAKPKAKPAATVPSMMSRKAATTTTTAKAAMSKA 600
Query: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVYQGVFCRDMAVVGTLLSRGGFVDRAMP 660
PVYQGVFCRDMAVVGTLLSRGGFVDRAMP
Sbjct: 601 AVTAPKAAAATAVAATAVAAAATAASTSTAAPVYQGVFCRDMAVVGTLLSRGGFVDRAMP 660
Query: 661 VKCEAMSC 668
VKCEAMSC
Sbjct: 661 VKCEAMSC 668
>Os07g0689800 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 603
Score = 557 bits (1436), Expect = e-159, Method: Compositional matrix adjust.
Identities = 317/509 (62%), Positives = 348/509 (68%), Gaps = 28/509 (5%)
Query: 1 MAVSSPTSAPEKKRKWLLSNRK-VIDKYLREARAILAT-------APXXXXXXXXXXXXX 52
MAVSSP +++R WL +RK +I YL EARA LA
Sbjct: 1 MAVSSP----DRRRNWLRGHRKQIIGDYLAEARAALAAAAAAPLDGEGGEHSAATAALGL 56
Query: 53 XXXXXXXSPRMESALELRGRALLSLRRYRDVAEMLRDYIPSCAKTCXXXXXXXXXXXXXX 112
SPRME+ALELR R+LL+LRRYR VA+MLRDYIPSC K
Sbjct: 57 VEAVLEMSPRMEAALELRARSLLALRRYRAVADMLRDYIPSCTKP-------CSADDTSS 109
Query: 113 XXXXXXXXXXISRAKLLSPDRHRSDAAAEPGAAVARSFRCFDISELKRRVLASLSKNPNT 172
SR LLSP R RSDAA+ A +R CFDIS+LK RVLA SKN +
Sbjct: 110 SSSSSSSCSSASRTDLLSPARDRSDAAS----AASRFLCCFDISDLKHRVLAGFSKNTSA 165
Query: 173 DTQWRYLVLGQACFHLGLIEDAMVLLQTGRRLASAAFRRESVCLXXXXXXXXXXXXXXXX 232
DTQWRYLVLGQACFHLGL+EDA LLQTGRRLASAAFRRESVC
Sbjct: 166 DTQWRYLVLGQACFHLGLMEDAAALLQTGRRLASAAFRRESVCWSEDSFSPSNLTANAIS 225
Query: 233 XXXGN-TTKSGSAFIIPAMESEAVSQLLAHVKXXXXXXXXXXXXXXXXXXXXXVRHFSKI 291
+KSG+A E+E+VSQLLAHVK VRHFSK+
Sbjct: 226 APASRRASKSGAA----GSEAESVSQLLAHVKLLLRRRAAAVAALDADLPAEAVRHFSKV 281
Query: 292 LEARRGVLPHPFAAACLVGRAAAFQAGGRPADAIADCNRALALDPAYIPALRARADLLQS 351
L+ARRGVLPHPFA ACLVGRA A ++ GR ADAIADCNRALALDPA+IPALR+RADLL+S
Sbjct: 282 LDARRGVLPHPFATACLVGRAEALRSSGRAADAIADCNRALALDPAFIPALRSRADLLES 341
Query: 352 VGALADCLRDLDHLKLLYDAALRDGKLPGPRWRPQGGVRYREIAGAHRKLTARIQGLRSR 411
VGAL+DCLRDL+HLKLLYDAALRDGKLPGP WRPQGGVR+ EIAGAHR LT RIQ LR R
Sbjct: 342 VGALSDCLRDLEHLKLLYDAALRDGKLPGPTWRPQGGVRFSEIAGAHRALTPRIQQLRGR 401
Query: 412 VAAGEACNIDYYALLGVRRGCTRSELERAHLLLTLKLKPDRAVVFGERLELVDEHRDLEA 471
VA GEAC++DYYALLGVRRGCTRSELERAHLLLTLKL+PDR F ERLELVDEHRDLEA
Sbjct: 402 VAGGEACSVDYYALLGVRRGCTRSELERAHLLLTLKLRPDRCASFAERLELVDEHRDLEA 461
Query: 472 VRDQARMSALLLYRMLQKGYSFIMSAVID 500
VRDQARMSAL LYRMLQKGYSFIMS V D
Sbjct: 462 VRDQARMSALSLYRMLQKGYSFIMSVVQD 490
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 35/37 (94%), Gaps = 1/37 (2%)
Query: 632 PVYQGVFCRDMAVVGTLLSRGGFVDRAMPVKCEAMSC 668
PV+QGVFCRDMAVVGTLLSRGGF DR +PVKCEAMSC
Sbjct: 568 PVFQGVFCRDMAVVGTLLSRGGF-DRPIPVKCEAMSC 603
>Os01g0273500 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 282
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 14/194 (7%)
Query: 303 FAAACLVGRAAAFQAGGRPADAIADCNRALALDPAYIPALRARADLLQSVGALADCLRDL 362
F+A C RAAA+QA G+ DAIADC+ A+ALD Y A+ RA L + + DL
Sbjct: 95 FSAICFANRAAAYQAMGQILDAIADCSLAIALDSNYSKAISRRAGLYELIRDYDQAGNDL 154
Query: 363 DHLKLLYDAALRDGKLPGPRWRPQGGVRYREIAGAHRKLTARIQGLRSRVAAGEACNIDY 422
L L + L++ + P + G I + + R+ L G + N+
Sbjct: 155 RRLISLLERQLQEN-IYTPSEKSDG------IRSSLNRSNLRLSALERDAKKGISLNV-- 205
Query: 423 YALLGVRRGCTRSELERAHLLLTLKLKPDRAVVFGERLELVDE--HRDLEAVRDQARMSA 480
Y +LG+ CT ++++A+ L+ PD+A F R E +++ RD + + R A
Sbjct: 206 YLILGIEPSCTFLDIKKAYRKAALRHHPDKAGNFLVRSENINDAVWRD---IANDIRKDA 262
Query: 481 LLLYRMLQKGYSFI 494
L++++ K Y+ +
Sbjct: 263 DYLFKLIGKAYAIL 276
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,766,861
Number of extensions: 519734
Number of successful extensions: 2207
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2189
Number of HSP's successfully gapped: 7
Length of query: 668
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 561
Effective length of database: 11,448,903
Effective search space: 6422834583
Effective search space used: 6422834583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 159 (65.9 bits)