Os01g0273500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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Os01g0273500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.52 | 0.31 | 9.88 | 0.566 | 0.353 | 0.855 | -0.0755 | -0.955 | 0.592 | 23 | 25.71 | 49 | -- | -- |
| 44.33 | 0.31 | 9.89 | 0.521 | 0.564 | 1.01 | -0.846 | -- | 0.566 | 23.5 | 70 | 56 | -- | -- |
| 43.39 | 0.307 | 9.88 | 0.567 | 0.354 | 0.855 | -- | -1.03 | 0.593 | 22.7 | 24.89 | 59 | -- | -- |
| 47.18 | 0.32 | 9.89 | 0.553 | 0.552 | 1.03 | -- | -- | 0.57 | 23.3 | 105.6 | 49 | -- | -- |
| 45.86 | 0.315 | 9.88 | 0.609 | -- | 1.08 | -- | -1.04 | 0.604 | -- | 22.12 | 58 | -- | -- |
| 56.25 | 0.352 | 9.9 | 0.523 | 1.12 | -- | -0.873 | -- | 0.534 | 23.9 | -- | -- | -- | -- |
| 59.56 | 0.361 | 9.9 | 0.558 | 1.12 | -- | -- | -- | 0.538 | 23.9 | -- | -- | -- | -- |
| 50.82 | 0.332 | 9.86 | 0.605 | -- | 1.09 | -- | -- | 0.607 | -- | 23.44 | 46 | -- | -- |
| 55.32 | 0.346 | 9.9 | -- | 0.557 | 1.04 | -- | -- | 0.506 | 23.4 | 147.6 | 49 | -- | -- |
| 138.96 | 0.551 | 9.88 | 0.592 | -- | -- | -- | -- | 0.553 | -- | -- | -- | -- | -- |
| 67.76 | 0.385 | 9.92 | -- | 1.13 | -- | -- | -- | 0.476 | 23.9 | -- | -- | -- | -- |
| 60.14 | 0.361 | 9.88 | -- | -- | 1.04 | -- | -- | 0.544 | -- | 20 | 44 | -- | -- |
| 148.2 | 0.568 | 9.89 | -- | -- | -- | -- | -- | 0.488 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.67 | radiation | 20 | 90 | < th | dose dependent | sin | 1 | NA |
| 3 | 43.19 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 8 | 43.72 | radiation | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 10 | 43.84 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 21 | 44.09 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 25 | 44.23 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 34 | 44.49 | humidity | 50 | 10 | > th | dose dependent | sin | 1 | NA |
| 39 | 44.52 | humidity | 50 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 42 | 44.54 | radiation | 1 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 61 | 44.72 | humidity | 90 | 30 | < th | dose dependent | sin | 2 | NA |
| 63 | 44.74 | radiation | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 76 | 44.85 | radiation | 30 | 30 | < th | dose dependent | no | NA | NA |
| 79 | 44.90 | radiation | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 87 | 45.00 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 88 | 45.00 | radiation | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 89 | 45.00 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 92 | 45.02 | radiation | 1 | 30 | > th | dose dependent | sin | 3 | NA |
| 95 | 45.04 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 112 | 45.13 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 116 | 45.16 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 17 |
| 118 | 45.16 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 17 |
| 139 | 45.22 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 147 | 45.27 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 10 |
| 164 | 45.28 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 168 | 45.29 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 182 | 45.36 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 185 | 45.38 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 205 | 45.41 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 212 | 45.43 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 226 | 45.44 | radiation | 1 | 30 | > th | dose dependent | no | NA | NA |
| 383 | 45.52 | radiation | 1 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 384 | 45.53 | humidity | 70 | 30 | > th | dose independent | rect. | 3 | 17 |
| 399 | 45.53 | radiation | 20 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 402 | 45.55 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 415 | 45.57 | radiation | 10 | 90 | < th | dose independent | sin | 1 | NA |
| 416 | 45.58 | radiation | 20 | 30 | < th | dose independent | rect. | 1 | 19 |
| 442 | 45.63 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 447 | 45.64 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 459 | 45.64 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 482 | 45.69 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 5 |
| 487 | 45.70 | humidity | 50 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 509 | 45.73 | radiation | 10 | 90 | > th | dose independent | rect. | 15 | 23 |
| 520 | 45.75 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 521 | 45.75 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 533 | 45.76 | humidity | 70 | 30 | > th | dose independent | rect. | 1 | 19 |
| 597 | 45.83 | radiation | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 649 | 45.85 | radiation | 30 | 30 | < th | dose dependent | rect. | 1 | 19 |
| 651 | 45.86 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 7 |
| 701 | 45.91 | humidity | 70 | 30 | > th | dose independent | rect. | 3 | 15 |
| 708 | 45.91 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 747 | 45.95 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 12 |
| 820 | 46.05 | radiation | 20 | 30 | < th | dose independent | rect. | 21 | 23 |
| 835 | 46.08 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 868 | 46.13 | radiation | 40 | 30 | < th | dose independent | rect. | 3 | 17 |
| 923 | 46.19 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |