BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0273500 Os01g0273500|AK069401
         (282 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0273500  Heat shock protein DnaJ, N-terminal domain con...   513   e-146
Os05g0374600  Heat shock protein DnaJ, N-terminal domain con...   294   4e-80
Os10g0486900  Tetratricopeptide-like helical domain containi...    65   5e-11

>Os01g0273500 Heat shock protein DnaJ, N-terminal domain containing protein
          Length = 282

 Score =  513 bits (1322), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/282 (90%), Positives = 256/282 (90%)

Query: 1   SSVKLWRYYIIAKSYFFIGKLEEAHQFLKKLGQEALVECRYGKXXXXXXXXXXTTICELL 60
           SSVKLWRYYIIAKSYFFIGKLEEAHQFLKKLGQEALVECRYGK          TTICELL
Sbjct: 1   SSVKLWRYYIIAKSYFFIGKLEEAHQFLKKLGQEALVECRYGKQSQQSVSSFSTTICELL 60

Query: 61  RLKAAGNKAFQAGKYSEAVEHYTAALLSNTESPRFSAICFANRAAAYQAMGQILDAIADC 120
           RLKAAGNKAFQAGKYSEAVEHYTAALLSNTESPRFSAICFANRAAAYQAMGQILDAIADC
Sbjct: 61  RLKAAGNKAFQAGKYSEAVEHYTAALLSNTESPRFSAICFANRAAAYQAMGQILDAIADC 120

Query: 121 SLAIALDSNYSKAISRRAGLYELIRDYDQAGNDLRRLISLLERQLQENIYTPSEKSDGIX 180
           SLAIALDSNYSKAISRRAGLYELIRDYDQAGNDLRRLISLLERQLQENIYTPSEKSDGI 
Sbjct: 121 SLAIALDSNYSKAISRRAGLYELIRDYDQAGNDLRRLISLLERQLQENIYTPSEKSDGIR 180

Query: 181 XXXXXXXXXXXXXXXDAKKGISLNVYLILGIEPSCTFLDIKKAYRKAALRHHPDKAGNFL 240
                          DAKKGISLNVYLILGIEPSCTFLDIKKAYRKAALRHHPDKAGNFL
Sbjct: 181 SSLNRSNLRLSALERDAKKGISLNVYLILGIEPSCTFLDIKKAYRKAALRHHPDKAGNFL 240

Query: 241 VRSENINDAVWRDIANDIRKDADYLFKLIGKAYAILSDPTTN 282
           VRSENINDAVWRDIANDIRKDADYLFKLIGKAYAILSDPTTN
Sbjct: 241 VRSENINDAVWRDIANDIRKDADYLFKLIGKAYAILSDPTTN 282



>Os05g0374600 Heat shock protein DnaJ, N-terminal domain containing protein
          Length = 394

 Score =  294 bits (753), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 153/277 (55%), Positives = 189/277 (68%), Gaps = 2/277 (0%)

Query: 2   SVKLWRYYIIAKSYFFIGKLEEAHQFLKKLGQEALVECRYGKXXXXXXXXXXTTICELLR 61
           S +LWR Y+I K+YF  GKLE+A + L K  Q   V+   G+          TTI ELL 
Sbjct: 41  SGRLWRTYLICKTYFLSGKLEDALELLNKHQQVTNVKESEGRTSQECFSSLSTTIRELLS 100

Query: 62  LKAAGNKAFQAGKYSEAVEHYTAALLSNTESPRFSAICFANRAAAYQAMGQILDAIADCS 121
            KAAGN+AFQA +YSEAVE Y+AAL  N++S  FSA+CF NRAA+YQA+GQ+ DAIADCS
Sbjct: 101 HKAAGNEAFQARRYSEAVEQYSAALARNSDSRPFSAVCFCNRAASYQALGQVTDAIADCS 160

Query: 122 LAIALDSNYSKAISRRAGLYELIRDYDQAGNDLRRLISLLERQLQENIYTPSEKSDGIXX 181
           LA+ LD+ Y KAISRRA LYE+IRDY QA NDLR+LISL+E+Q   +  +P  K      
Sbjct: 161 LAMVLDATYLKAISRRATLYEMIRDYGQAANDLRKLISLIEKQANNSGLSP--KVLNKHS 218

Query: 182 XXXXXXXXXXXXXXDAKKGISLNVYLILGIEPSCTFLDIKKAYRKAALRHHPDKAGNFLV 241
                         +AK+   LN+YLILGIEPS +  DIKKAYRKAALRHHPDKA   LV
Sbjct: 219 DLKQARTRLLSVEDEAKRDTPLNLYLILGIEPSSSPADIKKAYRKAALRHHPDKAAQLLV 278

Query: 242 RSENINDAVWRDIANDIRKDADYLFKLIGKAYAILSD 278
           R+E  +D  WRD+A ++  DAD+LFK IG+AY +LSD
Sbjct: 279 RNEKPDDGFWRDVAKEVHADADHLFKAIGEAYNVLSD 315



>Os10g0486900 Tetratricopeptide-like helical domain containing protein
          Length = 236

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 7/103 (6%)

Query: 63  KAAGNKAFQAGKYSEAVEHYTAAL-----LSNTESPRFSAICFANRAAAYQAMGQILDAI 117
           KA GNK F AG+Y  A+  Y  AL     L + E  R  + C +NRA  +  +G+  + I
Sbjct: 68  KAEGNKFFGAGEYERALSQYETALQIAAELESAEDIR--SACHSNRAVCFLKLGKYDETI 125

Query: 118 ADCSLAIALDSNYSKAISRRAGLYELIRDYDQAGNDLRRLISL 160
            +C+ A+ L+ +Y KA+ RR   +E +  YD+A  D++++I L
Sbjct: 126 KECTKALELNPSYLKALLRRGEAHEKLEHYDEAIADMKKIIEL 168



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,726,826
Number of extensions: 257589
Number of successful extensions: 766
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 4
Length of query: 282
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 182
Effective length of database: 11,814,401
Effective search space: 2150220982
Effective search space used: 2150220982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)