Os05g0374600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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Os05g0374600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.02 | 0.205 | 10.7 | 0.727 | 0.412 | 0.487 | 0.182 | 2.36 | 0.299 | 8.92 | 19.4 | 6231 | -- | -- |
| 24.12 | 0.231 | 10.8 | 0.483 | 0.422 | -0.127 | 0.142 | -- | 0.235 | 9.07 | 19.4 | 6231 | -- | -- |
| 18.69 | 0.201 | 10.7 | 0.7 | 0.412 | 0.695 | -- | 2.95 | 0.306 | 8.86 | 19.1 | 7822 | -- | -- |
| 22.15 | 0.219 | 10.8 | 0.663 | 0.427 | -0.338 | -- | -- | 0.263 | 8.83 | 14.3 | 24958 | -- | -- |
| 28.33 | 0.248 | 10.7 | 0.678 | -- | 0.681 | -- | 2.86 | 0.298 | -- | 19.15 | 7748 | -- | -- |
| 24.61 | 0.233 | 10.8 | 0.446 | 0.408 | -- | 0.166 | -- | 0.216 | 8.88 | -- | -- | -- | -- |
| 24.7 | 0.233 | 10.8 | 0.451 | 0.408 | -- | -- | -- | 0.216 | 8.84 | -- | -- | -- | -- |
| 31.36 | 0.261 | 10.8 | 0.733 | -- | -0.465 | -- | -- | 0.304 | -- | 13.6 | 20528 | -- | -- |
| 24.51 | 0.231 | 10.8 | -- | 0.412 | 0.348 | -- | -- | 0.0331 | 8.92 | 24.38 | 47520 | -- | -- |
| 34.19 | 0.273 | 10.8 | 0.451 | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
| 30.07 | 0.257 | 10.8 | -- | 0.409 | -- | -- | -- | 0.166 | 8.75 | -- | -- | -- | -- |
| 33.92 | 0.271 | 10.9 | -- | -- | 0.345 | -- | -- | 0.0317 | -- | 26.37 | 47520 | -- | -- |
| 39.57 | 0.294 | 10.8 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 2 | 18.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 3 | 18.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 4 | 18.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 11 | 18.56 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 39 | 18.80 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 60 | 18.89 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 77 | 18.92 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 256 | 19.12 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 260 | 19.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 428 | 19.25 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 503 | 19.28 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 530 | 19.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 748 | 19.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 817 | 19.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 979 | 19.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |