BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0302200 Os03g0302200|AK120853
         (799 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0302200  Zinc finger, RING-type domain containing protein   1228   0.0  
Os07g0690300  Chromatin SPT2 family protein                       172   8e-43
Os06g0283200  Zinc finger, RING-type domain containing protein    155   1e-37
Os12g0209700  Zinc finger, RING-type domain containing protein     70   7e-12

>Os03g0302200 Zinc finger, RING-type domain containing protein
          Length = 799

 Score = 1228 bits (3178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/799 (77%), Positives = 623/799 (77%)

Query: 1   MGKGGEGAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSASSAXXXXXXX 60
           MGKGGEGAVP                                     LSASSA       
Sbjct: 1   MGKGGEGAVPVGESGGRRRRRPGEDGGDDDDEEYVVEEDEEEECDEDLSASSAGEGGEGT 60

Query: 61  XXXXXXXXXXXXXXXTPRPRQPVKSRENGRKGKADPPVAXXXXXXXXXXXXXXXXXXXXX 120
                          TPRPRQPVKSRENGRKGKADPPVA                     
Sbjct: 61  DEEYEEGDEDEEEDETPRPRQPVKSRENGRKGKADPPVARSRRRKYEDDDDYSEEEDDRV 120

Query: 121 XXXGXXXXXXXXXXXXXXXXXXXAPRSKRMKKRGGRNVEGKLPLERSNRRRYXXXXXXXX 180
              G                   APRSKRMKKRGGRNVEGKLPLERSNRRRY        
Sbjct: 121 DEYGEDLEEEEEDLEEEEEEDDEAPRSKRMKKRGGRNVEGKLPLERSNRRRYEEDMDFDP 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEATKVRVKNMGRRKSTLNQRRGKMKSS 240
                                           LEATKVRVKNMGRRKSTLNQRRGKMKSS
Sbjct: 181 DMDEEEEEEDVDFDPEVEDEEEEDFEDEEDDELEATKVRVKNMGRRKSTLNQRRGKMKSS 240

Query: 241 SKVASRKVGSVKARNAASIRRRQKKRSMLDRYEDDDFIVEDEVMADWQPRKKARIRKQME 300
           SKVASRKVGSVKARNAASIRRRQKKRSMLDRYEDDDFIVEDEVMADWQPRKKARIRKQME
Sbjct: 241 SKVASRKVGSVKARNAASIRRRQKKRSMLDRYEDDDFIVEDEVMADWQPRKKARIRKQME 300

Query: 301 VDPPTPVFEAEIWPTIDSDTTDFEFVTSDEEAAIAEPTRVIKKGXXXXXXXXXXXXXXXX 360
           VDPPTPVFEAEIWPTIDSDTTDFEFVTSDEEAAIAEPTRVIKKG                
Sbjct: 301 VDPPTPVFEAEIWPTIDSDTTDFEFVTSDEEAAIAEPTRVIKKGRKKRVFVSDSSSDSEF 360

Query: 361 XXXXXXLGNLKESEPPESLKVLPSSPRKISVTXXXXXXXXXXXXPQEAGRATCGICLSEE 420
                 LGNLKESEPPESLKVLPSSPRKISVT            PQEAGRATCGICLSEE
Sbjct: 361 VVSDKELGNLKESEPPESLKVLPSSPRKISVTGNGEHKGKEKKEPQEAGRATCGICLSEE 420

Query: 421 QRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKEDTGLELTNSVIRV 480
           QRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKEDTGLELTNSVIRV
Sbjct: 421 QRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKEDTGLELTNSVIRV 480

Query: 481 EERDQVYQPTEEEIRRWLDPYENVVCIECNQGGDDSLMLLCDICDSSAHTYCVGLGREVP 540
           EERDQVYQPTEEEIRRWLDPYENVVCIECNQGGDDSLMLLCDICDSSAHTYCVGLGREVP
Sbjct: 481 EERDQVYQPTEEEIRRWLDPYENVVCIECNQGGDDSLMLLCDICDSSAHTYCVGLGREVP 540

Query: 541 EGNWYCGGCRLDGEAHSYHNHVNGNSGMFGAISPIGTFERQGIDLNVSPREIPRGNHSVE 600
           EGNWYCGGCRLDGEAHSYHNHVNGNSGMFGAISPIGTFERQGIDLNVSPREIPRGNHSVE
Sbjct: 541 EGNWYCGGCRLDGEAHSYHNHVNGNSGMFGAISPIGTFERQGIDLNVSPREIPRGNHSVE 600

Query: 601 SQASTAGASTPSGRQTNATNFRRRQMHDWIRSLLSRPRTTLGPVMHHNGVHQSGFVPSTE 660
           SQASTAGASTPSGRQTNATNFRRRQMHDWIRSLLSRPRTTLGPVMHHNGVHQSGFVPSTE
Sbjct: 601 SQASTAGASTPSGRQTNATNFRRRQMHDWIRSLLSRPRTTLGPVMHHNGVHQSGFVPSTE 660

Query: 661 PDHMNFCAPLESDTLHNTGSVPQSEPSQNFHVMSEANTSETSFGRHAALSERRQIYERFF 720
           PDHMNFCAPLESDTLHNTGSVPQSEPSQNFHVMSEANTSETSFGRHAALSERRQIYERFF
Sbjct: 661 PDHMNFCAPLESDTLHNTGSVPQSEPSQNFHVMSEANTSETSFGRHAALSERRQIYERFF 720

Query: 721 MLLSRPSPTIRPDLCHNASEHGSSVPRVEPNHMNFHAPPVANSPQTLLDGIPNRSNGFSF 780
           MLLSRPSPTIRPDLCHNASEHGSSVPRVEPNHMNFHAPPVANSPQTLLDGIPNRSNGFSF
Sbjct: 721 MLLSRPSPTIRPDLCHNASEHGSSVPRVEPNHMNFHAPPVANSPQTLLDGIPNRSNGFSF 780

Query: 781 TQAHSNFVDGNNFQGTEGV 799
           TQAHSNFVDGNNFQGTEGV
Sbjct: 781 TQAHSNFVDGNNFQGTEGV 799



>Os07g0690300 Chromatin SPT2 family protein
          Length = 525

 Score =  172 bits (437), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 134/243 (55%), Gaps = 20/243 (8%)

Query: 304 PTPVFEAEIWPTIDSDTTDFEFVTSDEEAA-----IAEPTRVIKKGXXXX-XXXXXXXXX 357
           P P  EA  WP ++SDT++FEFVTSDEEAA      AEP +   K               
Sbjct: 256 PEPDVEASAWPAVESDTSEFEFVTSDEEAADKEAPAAEPAKTKGKKGRKRWGSGSESSSD 315

Query: 358 XXXXXXXXXLGNLKESEPPESLKVLPSS-PRKISVTXXXXXXXXXXXXPQEAGRATCGIC 416
                    L +L+ S PP++    P++ PR+   T            P+EA + TCGIC
Sbjct: 316 SDYVISEQELKDLEVSMPPDAALQSPATLPRR---TFLSRRVGEKGKEPEEAWKQTCGIC 372

Query: 417 LSEEQRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKEDTGLELTNS 476
           LSEEQR T+QGVL+CC+HYFCFACIM+WSKVESRCPLCKRRFTTITKSS  D GL    +
Sbjct: 373 LSEEQRATIQGVLNCCAHYFCFACIMEWSKVESRCPLCKRRFTTITKSSMADLGLGSRKA 432

Query: 477 VIRVEERDQVYQPTEEEIRRWLDPYENVVCIE---CNQGGDDSLMLLC----DICDSSAH 529
           VIRVE+RDQV          +L  +  ++ IE   CN     S++        IC     
Sbjct: 433 VIRVEKRDQVMASLS---YCYLFSFARIIAIEFNICNVSKPLSVVWHLHGNSSICQCPLT 489

Query: 530 TYC 532
           +YC
Sbjct: 490 SYC 492



>Os06g0283200 Zinc finger, RING-type domain containing protein
          Length = 763

 Score =  155 bits (392), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 97/161 (60%), Gaps = 4/161 (2%)

Query: 411 ATCGICLSEEQRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKEDTG 470
            +CGICL++ +R  V+G LDCC+H+FCF CIM W++VESRCP CK RF TIT+      G
Sbjct: 25  VSCGICLTDARRA-VRGELDCCAHHFCFVCIMAWARVESRCPFCKARFRTITRPPVP--G 81

Query: 471 LELTNSVIRVEERDQVYQPTEEEIRRW-LDPYENVVCIECNQGGDDSLMLLCDICDSSAH 529
              +  V+ V ER+Q   P+         D Y N  C  CN   DD L++LC++CDS+ H
Sbjct: 82  RFPSQRVVAVPERNQACNPSGNGSSTVDADLYANTSCSVCNLSNDDELLMLCELCDSAVH 141

Query: 530 TYCVGLGREVPEGNWYCGGCRLDGEAHSYHNHVNGNSGMFG 570
           TYC GLG E+PEG+W+C  C    E HS     + NS   G
Sbjct: 142 TYCAGLGTEIPEGDWFCTDCMTAKEEHSRCEIDDDNSSDHG 182



>Os12g0209700 Zinc finger, RING-type domain containing protein
          Length = 1222

 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 412 TCGICLSEEQRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKEDT 469
           +CGIC      V  +GVLDCC H+FC+ CI  WS + +RCPLCK  F  IT +   DT
Sbjct: 32  SCGIC---RDIVIDRGVLDCCQHWFCYTCIDNWSAITNRCPLCKSEFQHITCTPVYDT 86



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,811,167
Number of extensions: 966819
Number of successful extensions: 3105
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3102
Number of HSP's successfully gapped: 5
Length of query: 799
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 690
Effective length of database: 11,344,475
Effective search space: 7827687750
Effective search space used: 7827687750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)