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Os07g0690300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chromatin SPT2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0164) R2 : 0.0148
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0902 (0.0345) R2dN8 : 0.019 R2N8 : 0.0148
σ : 0.309
deviance : 43.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.5 0.173 11.4 1.06 0.557 -0.369 -0.143 1.69 0.34 0.117 19.74 1540 -- --
15.11 0.182 11.5 0.566 0.415 -0.608 -0.161 -- 0.219 23.3 9.472 7362 -- --
13.58 0.172 11.4 1.06 0.558 -0.371 -- 1.7 0.34 0.0924 19.64 1563 -- --
15.22 0.183 11.5 0.573 0.416 -0.607 -- -- 0.22 23.3 9.472 7362 -- --
22.32 0.221 11.4 0.845 -- -0.843 -- 1.3 0.332 -- 19.64 1563 -- --
18.69 0.203 11.5 0.45 0.551 -- -0.131 -- 0.134 0.136 -- -- -- --
18.76 0.203 11.5 0.455 0.551 -- -- -- 0.135 0.129 -- -- -- --
24.06 0.229 11.5 0.651 -- -0.979 -- -- 0.273 -- 9.472 7362 -- --
23.05 0.225 11.5 -- 0.48 -0.331 -- -- 0.123 23.8 -6.361 827 -- --
37.9 0.288 11.5 0.473 -- -- -- -- 0.143 -- -- -- -- --
24.22 0.23 11.5 -- 0.558 -- -- -- 0.0839 0.174 -- -- -- --
34.56 0.275 11.5 -- -- -0.773 -- -- 0.178 -- 8.348 912 -- --
43.79 0.309 11.5 -- -- -- -- -- 0.0902 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.71 temperature 30 270 < th dose dependent rect. 23 21
2 12.75 temperature 30 270 < th dose dependent rect. 1 17
8 12.90 temperature 30 1440 < th dose dependent rect. 17 2
9 12.90 temperature 20 10 > th dose dependent rect. 6 20
10 12.90 temperature 20 90 > th dose dependent rect. 6 20
14 12.92 temperature 15 270 > th dose dependent rect. 6 18
18 12.95 temperature 30 1440 < th dose dependent rect. 17 4
20 12.96 temperature 30 1440 < th dose dependent rect. 15 7
25 12.98 temperature 20 720 > th dose dependent sin 5 NA
30 12.99 temperature 30 720 < th dose dependent rect. 23 17
32 13.00 temperature 15 1440 > th dose dependent rect. 18 1
38 13.02 temperature 20 1440 > th dose dependent rect. 15 7
44 13.03 temperature 15 1440 > th dose dependent rect. 17 4
58 13.05 temperature 20 720 > th dose dependent rect. 23 16
107 13.12 wind 9 43200 > th dose independent rect. 18 3
124 13.14 temperature 30 10 < th dose dependent rect. 4 17
132 13.15 temperature 20 10 > th dose dependent rect. 8 18
158 13.18 wind 7 43200 > th dose independent rect. 5 1
159 13.18 wind 9 43200 < th dose independent rect. 18 3
160 13.18 temperature 30 1440 < th dose dependent sin 17 NA
174 13.18 temperature 20 10 > th dose dependent rect. 6 22
186 13.19 temperature 20 10 > th dose dependent rect. 8 16
192 13.19 temperature 15 720 > th dose dependent rect. 21 20
195 13.20 wind 9 43200 > th dose dependent rect. 18 3
204 13.21 temperature 30 720 < th dose dependent sin 4 NA
208 13.21 wind 9 43200 > th dose dependent rect. 18 5
223 13.22 atmosphere 1005 43200 > th dose independent rect. 13 2
240 13.23 wind 9 43200 < th dose independent rect. 19 1
241 13.23 humidity 60 43200 > th dose independent rect. 19 1
243 13.23 atmosphere 1005 43200 < th dose independent rect. 13 1
245 13.23 temperature 20 10 > th dose dependent sin 0 NA
258 13.24 temperature 20 1440 > th dose dependent sin 18 NA
263 13.24 humidity 60 43200 < th dose dependent rect. 18 3
278 13.24 temperature 10 270 > th dose dependent rect. 4 22
279 13.25 humidity 60 43200 < th dose independent rect. 19 1
299 13.26 wind 7 43200 < th dose independent rect. 5 1
302 13.26 humidity 60 43200 < th dose dependent rect. 18 1
326 13.27 wind 7 43200 > th dose dependent rect. 5 1
361 13.29 temperature 25 4320 < th dose independent rect. 11 2
362 13.29 atmosphere 1005 43200 > th dose independent rect. 9 7
367 13.29 wind 9 43200 > th dose dependent rect. 18 7
406 13.31 radiation 30 43200 < th dose independent rect. 5 2
407 13.31 temperature 25 4320 < th dose independent rect. 10 4
410 13.31 radiation 30 43200 < th dose independent rect. 3 4
414 13.31 radiation 30 43200 < th dose independent rect. 18 13
448 13.32 temperature 25 4320 > th dose independent rect. 10 4
455 13.32 wind 9 43200 > th dose dependent rect. 19 1
474 13.32 temperature 30 30 < th dose dependent rect. 2 19
510 13.34 temperature 25 4320 > th dose independent rect. 11 2
514 13.34 atmosphere 1005 43200 < th dose independent rect. 9 7
549 13.35 temperature 25 4320 < th dose independent rect. 10 7
559 13.35 wind 9 43200 > th dose dependent rect. 18 10
587 13.36 temperature 25 4320 > th dose independent rect. 10 7
596 13.36 wind 9 43200 > th dose dependent rect. 22 1
651 13.37 radiation 1 14400 < th dose dependent rect. 18 15
661 13.37 radiation 1 14400 < th dose dependent rect. 18 20
669 13.38 radiation 1 14400 < th dose independent rect. 18 4
679 13.38 temperature 25 1440 > th dose independent rect. 10 12
709 13.39 radiation 10 43200 < th dose independent rect. 5 1
712 13.39 radiation 1 14400 < th dose independent rect. 18 2
713 13.39 radiation 1 43200 > th dose independent rect. 7 3
714 13.39 radiation 1 43200 < th dose independent rect. 7 3
726 13.39 temperature 25 1440 < th dose independent rect. 9 13
777 13.40 radiation 10 43200 < th dose independent rect. 19 11
786 13.40 wind 7 43200 > th dose dependent rect. 24 1
814 13.41 humidity 90 43200 < th dose independent rect. 9 1
817 13.41 humidity 50 43200 < th dose independent rect. 14 3
825 13.41 wind 9 43200 > th dose independent rect. 18 7
846 13.41 radiation 1 43200 < th dose dependent rect. 7 2
868 13.42 atmosphere 1005 43200 > th dose independent sin 0 NA
872 13.42 humidity 60 43200 > th dose independent rect. 8 3
890 13.42 atmosphere 995 43200 > th dose dependent rect. 13 1
891 13.42 atmosphere 1010 43200 < th dose dependent rect. 15 1
925 13.43 atmosphere 1010 43200 < th dose independent rect. 17 1
951 13.43 radiation 1 14400 < th dose dependent sin 9 NA
954 13.43 atmosphere 995 43200 > th dose dependent rect. 9 1
969 13.43 atmosphere 995 43200 > th dose dependent rect. 11 5
988 13.43 temperature 20 270 > th dose dependent rect. 17 22
990 13.44 humidity 50 43200 < th dose independent rect. 16 1
991 13.44 atmosphere 1010 43200 > th dose independent rect. 19 1
992 13.44 atmosphere 1010 43200 < th dose independent rect. 19 1
997 13.44 humidity 50 43200 > th dose independent rect. 14 3