BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0690300 Os07g0690300|AK099674
         (525 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0690300  Chromatin SPT2 family protein                       520   e-147
Os03g0302200  Zinc finger, RING-type domain containing protein    176   3e-44
Os06g0283200  Zinc finger, RING-type domain containing protein     83   5e-16

>Os07g0690300 Chromatin SPT2 family protein
          Length = 525

 Score =  520 bits (1339), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/365 (73%), Positives = 268/365 (73%)

Query: 161 FAPIRVRKTSTKNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSGRRRRKRWATXXXXXX 220
           FAPIRVRKTSTKNH                            TSGRRRRKRWAT      
Sbjct: 161 FAPIRVRKTSTKNHVAKRKPPPGRKKKKRKPSRVSKAKPKKPTSGRRRRKRWATDDDEEE 220

Query: 221 XXXXXXXXXXXXXXXXXXHRPXXXXXXXXXTRDVTPEPDVEASAWPAVESDTSEFEFVTS 280
                             HRP         TRDVTPEPDVEASAWPAVESDTSEFEFVTS
Sbjct: 221 EDDADFIVEDDQEEEEDDHRPKKKAKAARKTRDVTPEPDVEASAWPAVESDTSEFEFVTS 280

Query: 281 XXXXXXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXYVISEQELKDLEVSMPPDAALQS 340
                           T                    YVISEQELKDLEVSMPPDAALQS
Sbjct: 281 DEEAADKEAPAAEPAKTKGKKGRKRWGSGSESSSDSDYVISEQELKDLEVSMPPDAALQS 340

Query: 341 PATLPRRTFLSRRVGEKGKEPEEAWKQTCGICLSEEQRATIQGVLNCCAHYFCFACIMEW 400
           PATLPRRTFLSRRVGEKGKEPEEAWKQTCGICLSEEQRATIQGVLNCCAHYFCFACIMEW
Sbjct: 341 PATLPRRTFLSRRVGEKGKEPEEAWKQTCGICLSEEQRATIQGVLNCCAHYFCFACIMEW 400

Query: 401 SKVESRCPLCKRRFTTITKSSMADLGLGSRKAVIRVEKRDQVMASLSYCYLFSFARIIAI 460
           SKVESRCPLCKRRFTTITKSSMADLGLGSRKAVIRVEKRDQVMASLSYCYLFSFARIIAI
Sbjct: 401 SKVESRCPLCKRRFTTITKSSMADLGLGSRKAVIRVEKRDQVMASLSYCYLFSFARIIAI 460

Query: 461 EFNICNVSKPLSVVWHLHGNSSICQCPLTSYCKRHDYLTPCEIPCGCMLLHLAVIFSSKC 520
           EFNICNVSKPLSVVWHLHGNSSICQCPLTSYCKRHDYLTPCEIPCGCMLLHLAVIFSSKC
Sbjct: 461 EFNICNVSKPLSVVWHLHGNSSICQCPLTSYCKRHDYLTPCEIPCGCMLLHLAVIFSSKC 520

Query: 521 SSFYL 525
           SSFYL
Sbjct: 521 SSFYL 525



>Os03g0302200 Zinc finger, RING-type domain containing protein
          Length = 799

 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/243 (42%), Positives = 136/243 (55%), Gaps = 20/243 (8%)

Query: 256 PEPDVEASAWPAVESDTSEFEFVTSXXXXXXXXXXXXXXXXTXXXXXXXXXXXXXXXXXX 315
           P P  EA  WP ++SDT++FEFVTS                                   
Sbjct: 304 PTPVFEAEIWPTIDSDTTDFEFVTSDEEAAIAEPTRVIKKG------RKKRVFVSDSSSD 357

Query: 316 XXYVISEQELKDLEVSMPPDAALQSPATLPRR---TFLSRRVGEKGKEPEEAWKQTCGIC 372
             +V+S++EL +L+ S PP++    P++ PR+   T      G++ KEP+EA + TCGIC
Sbjct: 358 SEFVVSDKELGNLKESEPPESLKVLPSS-PRKISVTGNGEHKGKEKKEPQEAGRATCGIC 416

Query: 373 LSEEQRATIQGVLNCCAHYFCFACIMEWSKVESRCPLCKRRFTTITKSSMADLGLGSRKA 432
           LSEEQR T+QGVL+CC+HYFCFACIM+WSKVESRCPLCKRRFTTITKSS  D GL    +
Sbjct: 417 LSEEQRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKEDTGLELTNS 476

Query: 433 VIRVEKRDQVMASLS---YCYLFSFARIIAIEFNICNVSKPLSVVWHLHGNSSICQCPLT 489
           VIRVE+RDQV          +L  +  ++ IE   CN     S++        IC     
Sbjct: 477 VIRVEERDQVYQPTEEEIRRWLDPYENVVCIE---CNQGGDDSLMLLC----DICDSSAH 529

Query: 490 SYC 492
           +YC
Sbjct: 530 TYC 532



>Os06g0283200 Zinc finger, RING-type domain containing protein
          Length = 763

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 3/75 (4%)

Query: 368 TCGICLSEEQRATIQGVLNCCAHYFCFACIMEWSKVESRCPLCKRRFTTITKSSMADLGL 427
           +CGICL++ +RA ++G L+CCAH+FCF CIM W++VESRCP CK RF TIT+  +   G 
Sbjct: 26  SCGICLTDARRA-VRGELDCCAHHFCFVCIMAWARVESRCPFCKARFRTITRPPVP--GR 82

Query: 428 GSRKAVIRVEKRDQV 442
              + V+ V +R+Q 
Sbjct: 83  FPSQRVVAVPERNQA 97



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,342,963
Number of extensions: 310909
Number of successful extensions: 1322
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1318
Number of HSP's successfully gapped: 3
Length of query: 525
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 420
Effective length of database: 11,553,331
Effective search space: 4852399020
Effective search space used: 4852399020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)