Os03g0302200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0302200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.47 | 0.306 | 12.5 | 0.866 | 0.738 | 1.53 | 0.281 | 2.78 | 0.314 | 23 | 0.8261 | 1422 | -- | -- |
| 43.54 | 0.307 | 12.5 | 1.11 | 0.865 | 1.03 | 0.199 | -- | 0.389 | 23 | 3.204 | 1372 | -- | -- |
| 42.73 | 0.304 | 12.5 | 0.867 | 0.708 | 1.54 | -- | 2.76 | 0.318 | 23.1 | 0.7896 | 1429 | -- | -- |
| 43.68 | 0.308 | 12.5 | 1.09 | 0.864 | 1.01 | -- | -- | 0.391 | 23 | 3.181 | 1372 | -- | -- |
| 60.11 | 0.363 | 12.5 | 0.945 | -- | 0.458 | -- | -0.151 | 0.24 | -- | 0.7896 | 1429 | -- | -- |
| 56.27 | 0.352 | 12.5 | 0.913 | 0.658 | -- | 0.054 | -- | 0.231 | 22.9 | -- | -- | -- | -- |
| 56.29 | 0.351 | 12.5 | 0.911 | 0.658 | -- | -- | -- | 0.231 | 22.9 | -- | -- | -- | -- |
| 52.22 | 0.337 | 12.5 | 1.12 | -- | 1.45 | -- | -- | 0.413 | -- | 3.04 | 1593 | -- | -- |
| 68.14 | 0.384 | 12.5 | -- | 0.82 | 0.839 | -- | -- | 0.332 | 23 | 10 | 7011 | -- | -- |
| 83.16 | 0.426 | 12.5 | 0.925 | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
| 78.14 | 0.414 | 12.5 | -- | 0.666 | -- | -- | -- | 0.129 | 23 | -- | -- | -- | -- |
| 79.56 | 0.417 | 12.5 | -- | -- | 0.521 | -- | -- | 0.136 | -- | 10 | 7011 | -- | -- |
| 105.72 | 0.48 | 12.5 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 3 | 40.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 4 | 41.00 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 8 | 41.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 14 | 41.03 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 49 | 41.14 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 58 | 41.22 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 63 | 41.28 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 109 | 41.81 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 136 | 41.87 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 145 | 41.87 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 223 | 42.08 | radiation | 1.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 249 | 42.14 | radiation | 1.0 | 1440 | < th | dose independent | sin | 16 | NA |
| 319 | 42.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 321 | 42.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 322 | 42.51 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 328 | 42.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 331 | 42.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 352 | 42.64 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 354 | 42.65 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 356 | 42.65 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 372 | 42.71 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 373 | 42.71 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 380 | 42.76 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 381 | 42.77 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 382 | 42.78 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 413 | 42.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 416 | 42.85 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 426 | 42.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 435 | 42.87 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 441 | 42.90 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 458 | 42.96 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 475 | 43.01 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 477 | 43.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 495 | 43.07 | wind | 9.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 496 | 43.07 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 506 | 43.11 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 514 | 43.14 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 526 | 43.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 538 | 43.20 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 547 | 43.22 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 550 | 43.24 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 555 | 43.27 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 560 | 43.30 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 580 | 43.36 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 581 | 43.36 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 607 | 43.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 626 | 43.46 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 635 | 43.48 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 640 | 43.49 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 656 | 43.51 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 731 | 43.60 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 736 | 43.61 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 757 | 43.63 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 786 | 43.66 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 792 | 43.68 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 795 | 43.68 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 799 | 43.69 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 808 | 43.70 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 817 | 43.70 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 19 |
| 878 | 43.76 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 896 | 43.78 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 919 | 43.80 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 931 | 43.80 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 948 | 43.82 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 974 | 43.83 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 976 | 43.83 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 3 | 23 |