BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0302200 Os03g0302200|AK120853
(799 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05670.1 | chr3:1653888-1657022 FORWARD LENGTH=884 251 1e-66
AT4G10940.1 | chr4:6708982-6710923 REVERSE LENGTH=193 82 1e-15
AT1G67180.1 | chr1:25130099-25132169 FORWARD LENGTH=454 64 4e-10
AT3G01460.1 | chr3:173316-182038 FORWARD LENGTH=2177 58 2e-08
AT2G39100.1 | chr2:16317462-16318869 FORWARD LENGTH=297 50 5e-06
>AT3G05670.1 | chr3:1653888-1657022 FORWARD LENGTH=884
Length = 883
Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/269 (49%), Positives = 166/269 (61%), Gaps = 33/269 (12%)
Query: 410 RATCGICLSEEQRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKEDT 469
+ CGICLSEE ++G LDCCSHYFCF CIM+WSKVESRCPLCK+RF TI+K ++
Sbjct: 410 KNVCGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTISKPARSTP 469
Query: 470 GLELTNSVIRVEERDQVYQPTEEEIRRWLDPYENVVCIECNQGGDDSLMLLCDICDSSAH 529
G++L VI V ERDQVYQPTEEE+R +LDPYEN++C EC+QG DD LMLLCD+CDSSAH
Sbjct: 470 GVDLREVVIPVPERDQVYQPTEEELRSYLDPYENIICTECHQGDDDGLMLLCDLCDSSAH 529
Query: 530 TYCVGLGREVPEGNWYCGGCR------LDGEAHSYHNHVNGNSGMFGAISP-IGTFERQG 582
TYCVGLGREVPEGNWYC GCR + H G SG + SP + + + Q
Sbjct: 530 TYCVGLGREVPEGNWYCEGCRPVALGSASSQTHIISEQQRG-SGFYSRPSPLVVSGQYQD 588
Query: 583 IDLNVSPR------------EIPRGNHSVESQASTAGASTPSGRQTNATNF-RRRQMHDW 629
+ L VSPR IP G+ A S+PSG AT RRR +H
Sbjct: 589 VSLIVSPRTPFFNGENLFSPRIPNGD---------AQGSSPSG--LGATTLSRRRTLHRH 637
Query: 630 IRSLLSRPRTTLGPVMHHNGVHQSGFVPS 658
I+++++ R + G GFV +
Sbjct: 638 IQNIINGDR-LINMGARTGGTSSDGFVTT 665
>AT4G10940.1 | chr4:6708982-6710923 REVERSE LENGTH=193
Length = 192
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 413 CGICLSEEQRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTIT--------KS 464
CGIC+ + +GVLDCC H+FCF CI WS + + CPLC+R F IT +S
Sbjct: 31 CGICMD---IIIDRGVLDCCQHWFCFECIDNWSTIMNLCPLCQREFQLITCVPVFDSGES 87
Query: 465 SKEDTGLELTNSVIRVEERDQVYQPTEEEI--RRWLDPYEN-VVCIECNQ---------- 511
SK D L + +EE V I ++D EN VVC++ +
Sbjct: 88 SKVDEDLVSGDEDCCIEEETDVVSSPSHYIDDTHYID--ENAVVCLDGDLCKIRNTFSYI 145
Query: 512 GGDDSL--MLLCDICDSSAHTYCVGLGRE-VPEGNWYC 546
GD +L + CD CD H CVG E E W C
Sbjct: 146 EGDSNLDTSIACDSCDMWYHAICVGFDVENASEDTWVC 183
>AT1G67180.1 | chr1:25130099-25132169 FORWARD LENGTH=454
Length = 453
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 33/160 (20%)
Query: 409 GRATCGICLSEEQRVTVQGVLDCCSHYFCFACIMQWS------KVESRCPLCKRRFTTIT 462
+ +C IC +E + +G+L C H FC++CI +W+ + ++ CPLCK F TIT
Sbjct: 296 AQVSCIICWTEFS--SSRGILPC-GHRFCYSCIQKWADRLVSERKKTTCPLCKSNFITIT 352
Query: 463 KSSKEDTG-----------LELTNSVIRVEERDQVYQPTEEEIRRWLDPYENVV-CIECN 510
K D+ L TN+++ V P EEE R+ L+P C C
Sbjct: 353 KIEDADSSDQKIYSQTVPDLSSTNNIL-------VVLPEEEEQRQTLNPLTRASGCSRCY 405
Query: 511 QGGDDSLMLLCDICD-SSAHTYCVGLGREVPEGNWYCGGC 549
+ L++ C +C+ H+YC+ +P W C C
Sbjct: 406 LTEPEELLIRCHLCNFRRIHSYCLD-PYLLP---WTCNHC 441
>AT3G01460.1 | chr3:173316-182038 FORWARD LENGTH=2177
Length = 2176
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 500 PYENVVCIECNQGGDDSLMLLCDICDSSAHTYCVG--LGREVPEGNWYCGGCRL 551
P++ VC C DD +LLCD CD+ HTYC+ L R +P+GNWYC C +
Sbjct: 1284 PWDEGVCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIR-IPDGNWYCPSCVI 1336
>AT2G39100.1 | chr2:16317462-16318869 FORWARD LENGTH=297
Length = 296
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 375 PPESLKVLPSSPRKISVTXXXXXXXXXXXXPQEAGRATCGICLSEEQRVTVQGVLDCCSH 434
PP PSS R + P G+ +C ICL V+ C H
Sbjct: 2 PPLPSSTAPSSSRHLRSPESIAKFAGRAIFPALQGK-SCPICLENLTERRSAAVITVCKH 60
Query: 435 YFCFACIMQWSKVESRCPLCKRRF 458
+C ACI +WS + CPLC RF
Sbjct: 61 GYCLACIRKWSSFKRNCPLCNTRF 84
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,588,762
Number of extensions: 588532
Number of successful extensions: 2414
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2475
Number of HSP's successfully gapped: 8
Length of query: 799
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 692
Effective length of database: 8,173,057
Effective search space: 5655755444
Effective search space used: 5655755444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)