BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0690300 Os07g0690300|AK099674
         (525 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05670.1  | chr3:1653888-1657022 FORWARD LENGTH=884            109   4e-24
AT4G10940.1  | chr4:6708982-6710923 REVERSE LENGTH=193             64   3e-10

>AT3G05670.1 | chr3:1653888-1657022 FORWARD LENGTH=884
          Length = 883

 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%)

Query: 318 YVISEQELKDLEVSMPPDAALQSPATLPRRTFLSRRV----------GEKGKE--PEEAW 365
           Y ISE+E + +  +     +  + A+  R+T +++ +          GEK  E    +  
Sbjct: 350 YTISEEEREQIREAGSLLKSSVNHASSIRQTTVNKDLPQLRKSPVKKGEKKVELVKRDVI 409

Query: 366 KQTCGICLSEEQRATIQGVLNCCAHYFCFACIMEWSKVESRCPLCKRRFTTITKSSMADL 425
           K  CGICLSEE    ++G L+CC+HYFCF CIMEWSKVESRCPLCK+RF TI+K + +  
Sbjct: 410 KNVCGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTISKPARSTP 469

Query: 426 GLGSRKAVIRVEKRDQVMASLS---YCYLFSFARIIAIE 461
           G+  R+ VI V +RDQV          YL  +  II  E
Sbjct: 470 GVDLREVVIPVPERDQVYQPTEEELRSYLDPYENIICTE 508



>AT4G10940.1 | chr4:6708982-6710923 REVERSE LENGTH=193
          Length = 192

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 18/129 (13%)

Query: 367 QTCGICLSEEQRATIQGVLNCCAHYFCFACIMEWSKVESRCPLCKRRFTTIT-------- 418
           + CGIC+        +GVL+CC H+FCF CI  WS + + CPLC+R F  IT        
Sbjct: 29  ERCGICM---DIIIDRGVLDCCQHWFCFECIDNWSTIMNLCPLCQREFQLITCVPVFDSG 85

Query: 419 KSSMADLGLGSRKAVIRVEKRDQVMASLSY----CYLFSFARIIAIEFNICNVSKPLSVV 474
           +SS  D  L S      +E+   V++S S+     +      ++ ++ ++C +    S  
Sbjct: 86  ESSKVDEDLVSGDEDCCIEEETDVVSSPSHYIDDTHYIDENAVVCLDGDLCKIRNTFS-- 143

Query: 475 WHLHGNSSI 483
            ++ G+S++
Sbjct: 144 -YIEGDSNL 151



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,864,436
Number of extensions: 198726
Number of successful extensions: 966
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1006
Number of HSP's successfully gapped: 5
Length of query: 525
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 422
Effective length of database: 8,282,721
Effective search space: 3495308262
Effective search space used: 3495308262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)