Os12g0209700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os12g0209700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.12 | 0.2 | 10.8 | 0.193 | 0.322 | -0.542 | 0.37 | 2.82 | 0.208 | 4.72 | 25.8 | 310 | -- | -- |
| 19.76 | 0.207 | 10.8 | -0.134 | 0.371 | -0.278 | 0.00508 | -- | 0.129 | 4.6 | 25.8 | 363 | -- | -- |
| 18.41 | 0.2 | 10.8 | 0.195 | 0.321 | -0.579 | -- | 2.91 | 0.197 | 4.49 | 26.3 | 372 | -- | -- |
| 19.75 | 0.207 | 10.8 | -0.133 | 0.369 | -0.279 | -- | -- | 0.131 | 4.69 | 25.8 | 313 | -- | -- |
| 21.75 | 0.217 | 10.8 | 0.284 | -- | -0.858 | -- | 3.1 | 0.235 | -- | 25.7 | 314 | -- | -- |
| 21.06 | 0.215 | 10.8 | -0.175 | 0.489 | -- | 0.129 | -- | 0.118 | 4.82 | -- | -- | -- | -- |
| 21.11 | 0.215 | 10.8 | -0.175 | 0.49 | -- | -- | -- | 0.117 | 4.83 | -- | -- | -- | -- |
| 24.15 | 0.229 | 10.8 | -0.0715 | -- | -0.59 | -- | -- | 0.165 | -- | 25.19 | 271 | -- | -- |
| 20.18 | 0.209 | 10.8 | -- | 0.35 | -0.315 | -- | -- | 0.146 | 4.79 | 25.7 | 269 | -- | -- |
| 33.78 | 0.272 | 10.8 | -0.157 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 21.91 | 0.219 | 10.8 | -- | 0.487 | -- | -- | -- | 0.137 | 4.84 | -- | -- | -- | -- |
| 24.28 | 0.229 | 10.8 | -- | -- | -0.599 | -- | -- | 0.173 | -- | 25.16 | 269 | -- | -- |
| 34.43 | 0.274 | 10.8 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.64 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 6 | 17.75 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 40 | 17.95 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 43 | 17.97 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 50 | 18.00 | temperature | 25.0 | 270 | > th | dose dependent | sin | 21 | NA |
| 54 | 18.01 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 127 | 18.19 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 140 | 18.22 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 178 | 18.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 196 | 18.31 | temperature | 25.0 | 270 | > th | dose dependent | no | NA | NA |
| 294 | 18.46 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 296 | 18.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 309 | 18.47 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 310 | 18.48 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 3 |
| 311 | 18.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 316 | 18.49 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 342 | 18.52 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 371 | 18.54 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 393 | 18.56 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 395 | 18.56 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 420 | 18.58 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 422 | 18.58 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 14 |
| 440 | 18.59 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 10 |
| 482 | 18.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 23 |
| 494 | 18.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 504 | 18.64 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 537 | 18.66 | temperature | 30.0 | 270 | < th | dose dependent | sin | 22 | NA |
| 544 | 18.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 545 | 18.67 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 557 | 18.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 571 | 18.68 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 583 | 18.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 585 | 18.69 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 600 | 18.70 | radiation | 1.0 | 270 | > th | dose independent | sin | 14 | NA |
| 601 | 18.70 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 612 | 18.71 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 617 | 18.71 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 619 | 18.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 631 | 18.72 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 643 | 18.72 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 648 | 18.72 | radiation | 1.0 | 30 | > th | dose independent | rect. | 16 | 19 |
| 649 | 18.72 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 670 | 18.73 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 711 | 18.74 | temperature | 30.0 | 30 | < th | dose independent | rect. | 11 | 5 |
| 759 | 18.75 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 16 | 19 |
| 776 | 18.77 | wind | 3.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 778 | 18.77 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 823 | 18.79 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 824 | 18.79 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 853 | 18.80 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 903 | 18.82 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 16 | 19 |
| 927 | 18.83 | radiation | 30.0 | 10 | < th | dose independent | rect. | 16 | 19 |
| 928 | 18.83 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 16 | 19 |
| 938 | 18.83 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 940 | 18.83 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 16 | 19 |
| 966 | 18.85 | humidity | 60.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 968 | 18.85 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 971 | 18.85 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 3 |
| 979 | 18.85 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 20 |