BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0209700 Os12g0209700|Os12g0209700
         (1222 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0209700  Zinc finger, RING-type domain containing protein   2432   0.0  
Os03g0302200  Zinc finger, RING-type domain containing protein     70   7e-12

>Os12g0209700 Zinc finger, RING-type domain containing protein
          Length = 1222

 Score = 2432 bits (6304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1181/1222 (96%), Positives = 1181/1222 (96%)

Query: 1    MSMQMDVDGESSGARALGDMGDLETYAFENESCGICRDIVIDRGVLDCCQHWFCYTCIDN 60
            MSMQMDVDGESSGARALGDMGDLETYAFENESCGICRDIVIDRGVLDCCQHWFCYTCIDN
Sbjct: 1    MSMQMDVDGESSGARALGDMGDLETYAFENESCGICRDIVIDRGVLDCCQHWFCYTCIDN 60

Query: 61   WSAITNRCPLCKSEFQHITCTPVYDTTGANNEDEYSLTSGDDDWLQGESNTLSFPSYYID 120
            WSAITNRCPLCKSEFQHITCTPVYDTTGANNEDEYSLTSGDDDWLQGESNTLSFPSYYID
Sbjct: 61   WSAITNRCPLCKSEFQHITCTPVYDTTGANNEDEYSLTSGDDDWLQGESNTLSFPSYYID 120

Query: 121  AEAVVCLDDGDCKIRSGLVSVEDDSTFDTSIACDSCDLCGDCSTGSDRTTIDASFSGRVS 180
            AEAVVCLDDGDCKIRSGLVSVEDDSTFDTSIACDSCDLCGDCSTGSDRTTIDASFSGRVS
Sbjct: 121  AEAVVCLDDGDCKIRSGLVSVEDDSTFDTSIACDSCDLCGDCSTGSDRTTIDASFSGRVS 180

Query: 181  VSVADEGETALVVSMVGVHSEIRDGLKTEQKGLNSNSYPSYSKDDLLNETVADAKILRNS 240
            VSVADEGETALVVSMVGVHSEIRDGLKTEQKGLNSNSYPSYSKDDLLNETVADAKILRNS
Sbjct: 181  VSVADEGETALVVSMVGVHSEIRDGLKTEQKGLNSNSYPSYSKDDLLNETVADAKILRNS 240

Query: 241  DGFSISHNRYSEMNLVHTVSSEPTERPLEFSPIRESAHTLFRPEQGNMSNVQAPSCSFSQ 300
            DGFSISHNRYSEMNLVHTVSSEPTERPLEFSPIRESAHTLFRPEQGNMSNVQAPSCSFSQ
Sbjct: 241  DGFSISHNRYSEMNLVHTVSSEPTERPLEFSPIRESAHTLFRPEQGNMSNVQAPSCSFSQ 300

Query: 301  TSKVPENSGEENALFRNNARSTVIESPQLSSPAGNVARSNDIDMIDAGEVQQMRSAPVGQ 360
            TSKVPENSGEENALFRNNARSTVIESPQLSSPAGNVARSNDIDMIDAGEVQQMRSAPVGQ
Sbjct: 301  TSKVPENSGEENALFRNNARSTVIESPQLSSPAGNVARSNDIDMIDAGEVQQMRSAPVGQ 360

Query: 361  LTSMHDGESISDMEEVKYKESGDEIGHPAKRARSEVPEQEINMIGNSDDRTTSSAAKATI 420
            LTSMHDGESISDMEEVKYKESGDEIGHPAKRARSEVPEQEINMIGNSDDRTTSSAAKATI
Sbjct: 361  LTSMHDGESISDMEEVKYKESGDEIGHPAKRARSEVPEQEINMIGNSDDRTTSSAAKATI 420

Query: 421  GDTPEFLRSDKSVPDIMSIVEGEDYSRDPGRELARPVGRRAGDKPGLRVKKIFRKEEGKK 480
            GDTPEFLRSDKSVPDIMSIVEGEDYSRDPGRELARPVGRRAGDKPGLRVKKIFRKEEGKK
Sbjct: 421  GDTPEFLRSDKSVPDIMSIVEGEDYSRDPGRELARPVGRRAGDKPGLRVKKIFRKEEGKK 480

Query: 481  STAVVQKLQQEIREVVRDTGTTILEKENAFDEKLLTAFRAAIGKPADEPAGRANLSLIKS 540
            STAVVQKLQQEIREVVRDTGTTILEKENAFDEKLLTAFRAAIGKPADEPAGRANLSLIKS
Sbjct: 481  STAVVQKLQQEIREVVRDTGTTILEKENAFDEKLLTAFRAAIGKPADEPAGRANLSLIKS 540

Query: 541  RRALLQKGKIRENLTKKLYGSSAGRRRSAWHRDWEVEFWKHRCSSGINPEKIETXXXXXX 600
            RRALLQKGKIRENLTKKLYGSSAGRRRSAWHRDWEVEFWKHRCSSGINPEKIET      
Sbjct: 541  RRALLQKGKIRENLTKKLYGSSAGRRRSAWHRDWEVEFWKHRCSSGINPEKIETLQSVLQ 600

Query: 601  XXXXXXEMDKEIAQDKKGVNTDSILSRVYLADASVVPRKDDVKPLSAVAGCPPNNSKAPN 660
                  EMDKEIAQDKKGVNTDSILSRVYLADASVVPRKDDVKPLSAVAGCPPNNSKAPN
Sbjct: 601  LLKKSSEMDKEIAQDKKGVNTDSILSRVYLADASVVPRKDDVKPLSAVAGCPPNNSKAPN 660

Query: 661  KPTPGTETTKISSPNSTGKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIKHDKRKW 720
            KPTPGTETTKISSPNSTGKVL                             GDIKHDKRKW
Sbjct: 661  KPTPGTETTKISSPNSTGKVLSSSIISKEASSRRENKNSQAAPNQQNQSAGDIKHDKRKW 720

Query: 721  ALEVLARKNAISITSKDKSEVADDLKGNYPLLAQLPVDMRPQLTTGRHNKVPLSVRQAQL 780
            ALEVLARKNAISITSKDKSEVADDLKGNYPLLAQLPVDMRPQLTTGRHNKVPLSVRQAQL
Sbjct: 721  ALEVLARKNAISITSKDKSEVADDLKGNYPLLAQLPVDMRPQLTTGRHNKVPLSVRQAQL 780

Query: 781  YRIVEHYLQKANLSVIRRCADTELAIADAVNVEKDISERSSSKSVYVNLCSQATRQPAKG 840
            YRIVEHYLQKANLSVIRRCADTELAIADAVNVEKDISERSSSKSVYVNLCSQATRQPAKG
Sbjct: 781  YRIVEHYLQKANLSVIRRCADTELAIADAVNVEKDISERSSSKSVYVNLCSQATRQPAKG 840

Query: 841  KSENDASDLIEKSESENGPLPQQVQTENTDICNIDTEESLNRTGHSDLRASPRQTIKGET 900
            KSENDASDLIEKSESENGPLPQQVQTENTDICNIDTEESLNRTGHSDLRASPRQTIKGET
Sbjct: 841  KSENDASDLIEKSESENGPLPQQVQTENTDICNIDTEESLNRTGHSDLRASPRQTIKGET 900

Query: 901  GGDLVPEKTVGFSNVEEALKMAGLLDSPPNSPERKNTIIEGGCIVDTDSEPSKKLQSTSD 960
            GGDLVPEKTVGFSNVEEALKMAGLLDSPPNSPERKNTIIEGGCIVDTDSEPSKKLQSTSD
Sbjct: 901  GGDLVPEKTVGFSNVEEALKMAGLLDSPPNSPERKNTIIEGGCIVDTDSEPSKKLQSTSD 960

Query: 961  SIVRDISSHKDADDSSMLIDLHDENGQNLHTVTSSQQSKHTGDEHQKLILGEESTDVTAN 1020
            SIVRDISSHKDADDSSMLIDLHDENGQNLHTVTSSQQSKHTGDEHQKLILGEESTDVTAN
Sbjct: 961  SIVRDISSHKDADDSSMLIDLHDENGQNLHTVTSSQQSKHTGDEHQKLILGEESTDVTAN 1020

Query: 1021 KIVSVNLDEAGCSAEHGNSNGSNKEIPADTNMPDEGAGHVGGAKEVKVPASDLCNHSCQA 1080
            KIVSVNLDEAGCSAEHGNSNGSNKEIPADTNMPDEGAGHVGGAKEVKVPASDLCNHSCQA
Sbjct: 1021 KIVSVNLDEAGCSAEHGNSNGSNKEIPADTNMPDEGAGHVGGAKEVKVPASDLCNHSCQA 1080

Query: 1081 NSSPTEGKKDSKIPILDSTEDRSCSNNAELNNRLPNRNKLSTDPAQSGDDSKKSARDPDN 1140
            NSSPTEGKKDSKIPILDSTEDRSCSNNAELNNRLPNRNKLSTDPAQSGDDSKKSARDPDN
Sbjct: 1081 NSSPTEGKKDSKIPILDSTEDRSCSNNAELNNRLPNRNKLSTDPAQSGDDSKKSARDPDN 1140

Query: 1141 HKPDSSGSIHKKVEMFVKENIRPLCKSGVITVEQYRWAVAKTTDKVMKYHSDAKNANFLI 1200
            HKPDSSGSIHKKVEMFVKENIRPLCKSGVITVEQYRWAVAKTTDKVMKYHSDAKNANFLI
Sbjct: 1141 HKPDSSGSIHKKVEMFVKENIRPLCKSGVITVEQYRWAVAKTTDKVMKYHSDAKNANFLI 1200

Query: 1201 KEGDKVKKLALQYVEAAQQKVT 1222
            KEGDKVKKLALQYVEAAQQKVT
Sbjct: 1201 KEGDKVKKLALQYVEAAQQKVT 1222



>Os03g0302200 Zinc finger, RING-type domain containing protein
          Length = 799

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 32  SCGIC---RDIVIDRGVLDCCQHWFCYTCIDNWSAITNRCPLCKSEFQHITCTPVYDT 86
           +CGIC      V  +GVLDCC H+FC+ CI  WS + +RCPLCK  F  IT +   DT
Sbjct: 412 TCGICLSEEQRVTVQGVLDCCSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKEDT 469



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 41,271,924
Number of extensions: 1815371
Number of successful extensions: 4930
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4929
Number of HSP's successfully gapped: 2
Length of query: 1222
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1110
Effective length of database: 11,187,833
Effective search space: 12418494630
Effective search space used: 12418494630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 162 (67.0 bits)