BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0299900 Os03g0299900|AK069075
         (464 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0299900  Similar to Plastid aminotransferase (Fragment)      845   0.0  
Os03g0195100  Similar to Plastid aminotransferase (Fragment)      534   e-152
Os01g0871300  1-aminocyclopropane-1-carboxylate synthase fam...    79   7e-15

>Os03g0299900 Similar to Plastid aminotransferase (Fragment)
          Length = 464

 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/422 (97%), Positives = 410/422 (97%)

Query: 43  VNVRCVSSPPATETSFKTKVPRNANMAKLQAGYLFPEIARRRAAHLLKFPDAKIISLGIG 102
           VNVRCVSSPPATETSFKTKVPRNANMAKLQAGYLFPEIARRRAAHLLKFPDAKIISLGIG
Sbjct: 43  VNVRCVSSPPATETSFKTKVPRNANMAKLQAGYLFPEIARRRAAHLLKFPDAKIISLGIG 102

Query: 103 DTTEPIPDVITNAMAKRAHALSTVDGYSGYGAEQGEKKLRAAIAATYYADLGIEETDIFV 162
           DTTEPIPDVITNAMAKRAHALSTVDGYSGYGAEQGEKKLRAAIAATYYADLGIEETDIFV
Sbjct: 103 DTTEPIPDVITNAMAKRAHALSTVDGYSGYGAEQGEKKLRAAIAATYYADLGIEETDIFV 162

Query: 163 SDGAKCDISRLQVLFGSNVKIAVQDPSYPAYVDSSVIMGQTGLYQEDVQKYGNIEYMKCS 222
           SDGAKCDISRLQVLFGSNVKIAVQDPSYPAYVDSSVIMGQTGLYQEDVQKYGNIEYMKCS
Sbjct: 163 SDGAKCDISRLQVLFGSNVKIAVQDPSYPAYVDSSVIMGQTGLYQEDVQKYGNIEYMKCS 222

Query: 223 PENGFFPDLSSVPRTDIIFFCSPNNPTGAAASRDQLTKLVKFAKDNGSIIVYDSAYAMYI 282
           PENGFFPDLSSVPRTDIIFFCSPNNPTGAAASRDQLTKLVKFAKDNGSIIVYDSAYAMYI
Sbjct: 223 PENGFFPDLSSVPRTDIIFFCSPNNPTGAAASRDQLTKLVKFAKDNGSIIVYDSAYAMYI 282

Query: 283 SDDSPKSIFEIPGAKEVAIETASFSKYAGFTGVRLGWTVVPKELLFSDGHPVAKDFNRIV 342
           SDDSPKSIFEIPGAKEVAIETASFSKYAGFTGVRLGWTVVPKELLFSDGHPVAKDFNRIV
Sbjct: 283 SDDSPKSIFEIPGAKEVAIETASFSKYAGFTGVRLGWTVVPKELLFSDGHPVAKDFNRIV 342

Query: 343 CTCFNGASNISQAGGLGCLSPEGLKAMSDVVGFYKENTKIIVDTFTSLGFNVYGAKNAPY 402
           CTCFNGASNISQAGGLGCLSPEGLKAMSDVVGFYKENTKIIVDTFTSLGFNVYGAKNAPY
Sbjct: 343 CTCFNGASNISQAGGLGCLSPEGLKAMSDVVGFYKENTKIIVDTFTSLGFNVYGAKNAPY 402

Query: 403 VWVHFPGRNSWDVFAEILEKAHVVTTXXXXXXXXXXXXVRVSAFGHRENIIEAARRLKQL 462
           VWVHFPGRNSWDVFAEILEKAHVVTT            VRVSAFGHRENIIEAARRLKQL
Sbjct: 403 VWVHFPGRNSWDVFAEILEKAHVVTTPGSGFGPGGEGFVRVSAFGHRENIIEAARRLKQL 462

Query: 463 YK 464
           YK
Sbjct: 463 YK 464



>Os03g0195100 Similar to Plastid aminotransferase (Fragment)
          Length = 440

 Score =  534 bits (1376), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/409 (62%), Positives = 316/409 (77%), Gaps = 6/409 (1%)

Query: 59  KTKVPRNANMAKLQAGYLFPEIARRRAAHLLKFPDAKIISLGIGDTTEPIPDVITNAMAK 118
           +T V RN NM KLQ GYLFPEI+ +R  HL K+PDAK+ISLGIGDTTEPIP ++T+AMA+
Sbjct: 31  RTSVLRNPNMEKLQKGYLFPEISIKREEHLKKYPDAKVISLGIGDTTEPIPSIVTSAMAE 90

Query: 119 RAHALSTVDGYSGYGAEQGEKKLRAAIAATYYADLGIEETDIFVSDGAKCDISRLQVLFG 178
            A ALST +GY GYG EQG K LR  IA   Y D+GI+E+++F+SDGA+CDI+RLQ LFG
Sbjct: 91  YALALSTPEGYQGYGPEQGHKNLRKEIADKVYPDMGIKESEVFISDGAQCDIARLQTLFG 150

Query: 179 SNVKIAVQDPSYPAYVDSSVIMGQTGLYQEDVQKYGNIEYMKCSPENGFFPDLSSVPRTD 238
            NV IAVQDP++P YVD+ VIMGQTG   +D  +Y  IEYM+C+PEN FFPDLS V RTD
Sbjct: 151 PNVTIAVQDPTFPGYVDNGVIMGQTG-KADDGGRYAGIEYMRCAPENAFFPDLSRVRRTD 209

Query: 239 IIFFCSPNNPTGAAASRDQLTKLVKFAKDNGSIIVYD----SAYAMYISDDSPKSIFEIP 294
           +IFFCSPNNPTG AASR+QL +LV+ A+ NGSIIV+D    S  +   S  +P+SI+EIP
Sbjct: 210 VIFFCSPNNPTGHAASREQLRQLVELARRNGSIIVFDSAYSSYISSSSSSSTPRSIYEIP 269

Query: 295 GAKEVAIETASFSKYAGFTGVRLGWTVVPKELLFSDGHPVAKDFNRIVCTCFNGASNISQ 354
           GA+EVAIE +SFSK+AGFTGVRLGW VVP ELL+SDG PVA+DF+R+VCTCFNGAS I+Q
Sbjct: 270 GAREVAIEVSSFSKFAGFTGVRLGWAVVPDELLYSDGVPVARDFDRVVCTCFNGASGIAQ 329

Query: 355 AGGLGCLS-PEGLKAMSDVVGFYKENTKIIVDTFTSLGFNVYGAKNAPYVWVHFPGRNSW 413
           AGG+ CLS  EG  A++ VVG Y+EN +++V+TF SLG  V+G  +APYVWV FPGR SW
Sbjct: 330 AGGVACLSTEEGRGAVARVVGVYRENARVLVETFRSLGKEVHGGGDAPYVWVRFPGRRSW 389

Query: 414 DVFAEILEKAHVVTTXXXXXXXXXXXXVRVSAFGHRENIIEAARRLKQL 462
           DVFAEILEK HV+T             +RVSAF  R+ ++EA +RLK  
Sbjct: 390 DVFAEILEKTHVITVPGSGFGPGGEGFIRVSAFNSRDKVLEACQRLKSF 438



>Os01g0871300 1-aminocyclopropane-1-carboxylate synthase family protein
          Length = 458

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 154/365 (42%), Gaps = 50/365 (13%)

Query: 86  AHLLKFPDAKIISLGIGDTTEPIPDVITNAMAKRAHALSTVDGYSGYGAEQGEKKLRAAI 145
           A  L+     +I L  G+     PD  T  +   A   +  DGY+ Y    G  +LR AI
Sbjct: 73  ATALRQAGVPVIGLAAGE-----PDFDTPHVIAEAGMNAIKDGYTRYTPNAGTLELRKAI 127

Query: 146 AATYYADLGIEET--DIFVSDGAK-CDISRLQVLFGSNVKIAVQDPSYPAYVDSSVIMGQ 202
                 + GI  +   + VS+GAK C    +  +     ++ +  P + +Y + + + G 
Sbjct: 128 CNKLQEENGISYSPDQVLVSNGAKQCITQAVLAVCSPGDEVLIPAPYWVSYPEMATLAGA 187

Query: 203 TGLYQEDVQKYGNIEYMKCSPENGFF--PDLSSVP---RTDIIFFCSPNNPTGAAASRDQ 257
           T +             +  S    F   P+L +     ++ ++  CSP+NPTG+   ++ 
Sbjct: 188 TPVI------------LPTSISENFLLRPELLASKINEKSRLLILCSPSNPTGSVYPKEL 235

Query: 258 LTKLVKFAKDNGSIIVY-DSAYAMYISDDSPKSIF-EIPGAKEVAIETASFSKYAGFTGV 315
           L ++    K    ++V  D  Y   I   +  + F  +PG  +  +    FSK    TG 
Sbjct: 236 LEEIADIVKKYPRLLVLSDEIYEHIIYQPAKHTSFASLPGMWDRTLTVNGFSKAFAMTGW 295

Query: 316 RLGWTVVPKELLFSDGHPVAKDFNRIVCTCFNGASNISQAGGLGCLSP--EGLKAMSDVV 373
           RLG+   PK  + + G        +I     +GAS+ISQ  GL  L+    G +A+S +V
Sbjct: 296 RLGYLAAPKHFVAACG--------KIQSQFTSGASSISQKAGLAALNLGYAGGEAVSTMV 347

Query: 374 GFYKENTKIIVDTFTSL-GFNVYGAKNAPYVWVHFPG------------RNSWDVFAEIL 420
             ++E    +V +F  L G  +   + A Y+++ F              ++S  +   +L
Sbjct: 348 KAFQERRDYLVKSFKELPGVKISEPQGAFYLFIDFSSYYGSEVEGFGTIKDSESLCMFLL 407

Query: 421 EKAHV 425
           EKA V
Sbjct: 408 EKAQV 412



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,833,378
Number of extensions: 561038
Number of successful extensions: 1147
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1143
Number of HSP's successfully gapped: 3
Length of query: 464
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 360
Effective length of database: 11,605,545
Effective search space: 4177996200
Effective search space used: 4177996200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)