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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0195100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Plastid aminotransferase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.98 (0.112) R2 : 0.62
β1 : -4.77 (0.82) R2dD : 0.342 R2D : -0.448
β2 : 2.92 (0.159) R2dC : 0.288 R2C : 0.266
β3 : 3.48 (0.606) R2dE : 0.249 R2E : -0.456
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -38.9 (4.69) R2dD*E : 0.982 R2D*E : -0.375
γ1 : 2.06 (0.146) R2dN8 : 0.24 R2N8 : 0.0964
σ : 1.23
deviance : 701.04
__
_____
C
peak time of C : 1.17
E
wheather : temperature
threshold : 30
memory length : 4146
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
693.65 1.24 5.98 -4.8 2.94 3.36 1.44 -38.1 1.97 1.17 29.9 4158 -- --
849.59 1.37 5.19 1.34 2.85 1.55 0.861 -- 2.43 1 15.2 46369 -- --
701.04 1.23 5.98 -4.77 2.92 3.48 -- -38.9 2.06 1.17 30 4146 -- --
842.79 1.35 5.25 0.454 2.8 1.07 -- -- 2.16 0.944 13.9 47520 -- --
1213.37 1.62 5.92 -4.81 -- 3.83 -- -37.5 1.94 -- 29.85 3926 -- --
854.12 1.37 5.18 1.4 2.82 -- 1.05 -- 2.44 1.02 -- -- -- --
858.69 1.37 5.19 1.36 2.82 -- -- -- 2.44 0.984 -- -- -- --
1272.54 1.67 5.15 1.63 -- -1.45 -- -- 2.43 -- 29.85 3926 -- --
844.27 1.35 5.27 -- 2.81 1.38 -- -- 2.08 0.988 14.5 47520 -- --
1352.96 1.72 5.14 1.47 -- -- -- -- 2.49 -- -- -- -- --
907.74 1.41 5.22 -- 2.84 -- -- -- 2.29 1 -- -- -- --
1335.14 1.7 5.23 -- -- 1.49 -- -- 2.1 -- 14.6 47520 -- --
1409.94 1.75 5.18 -- -- -- -- -- 2.33 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 695.90 temperature 30 4320 < th dose independent rect. 14 22
2 696.25 temperature 30 4320 > th dose independent rect. 13 23
3 696.30 temperature 30 4320 > th dose independent rect. 10 6
5 696.91 temperature 30 4320 > th dose independent rect. 18 22
28 698.55 temperature 30 4320 > th dose independent rect. 13 6
43 698.73 temperature 30 4320 < th dose independent rect. 1 15
44 698.73 temperature 30 4320 < th dose independent rect. 18 22
46 698.77 temperature 30 4320 < th dose independent rect. 4 12
51 698.89 temperature 30 4320 < th dose independent rect. 9 7
52 698.90 temperature 30 4320 < th dose independent rect. 6 10
62 699.08 temperature 30 4320 > th dose independent sin 19 NA
68 699.39 temperature 30 4320 > th dose independent rect. 10 9
123 700.13 temperature 30 4320 < th dose independent sin 19 NA
150 700.30 temperature 30 4320 < th dose independent rect. 10 11
160 700.38 temperature 30 4320 < th dose independent rect. 10 22
168 700.42 temperature 30 4320 > th dose independent no NA NA
262 700.44 temperature 30 4320 < th dose independent rect. 10 19
270 700.54 temperature 30 4320 < th dose independent rect. 10 17
271 700.54 temperature 30 4320 < th dose independent rect. 1 20
274 700.57 temperature 30 4320 < th dose independent rect. 4 17
304 700.67 temperature 30 4320 < th dose independent rect. 6 15
348 700.80 temperature 30 4320 < th dose independent rect. 4 23
351 700.81 temperature 30 4320 < th dose independent rect. 6 23
352 700.82 temperature 30 4320 < th dose independent no NA NA
420 701.34 temperature 30 4320 < th dose independent rect. 13 8
439 701.54 temperature 30 4320 < th dose independent rect. 13 16
450 701.68 temperature 30 4320 < th dose independent rect. 13 14
509 702.74 radiation 10 14400 > th dose independent rect. 17 14
631 712.30 temperature 30 4320 > th dose dependent rect. 14 1
642 716.39 radiation 10 14400 > th dose independent rect. 6 1
697 721.05 temperature 25 4320 > th dose dependent rect. 18 13
712 722.47 temperature 30 4320 > th dose dependent sin 14 NA
715 722.55 temperature 25 4320 > th dose dependent rect. 18 10
753 723.38 temperature 25 4320 > th dose dependent sin 11 NA
933 725.02 temperature 25 4320 > th dose independent rect. 6 1