BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0195100 Os03g0195100|AY338236
(440 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33680.1 | chr4:16171847-16174630 REVERSE LENGTH=462 502 e-142
AT2G13810.1 | chr2:5768489-5772138 FORWARD LENGTH=457 468 e-132
AT4G28420.2 | chr4:14055687-14057409 FORWARD LENGTH=450 59 7e-09
AT5G53970.1 | chr5:21910676-21912594 FORWARD LENGTH=415 58 1e-08
AT2G20610.1 | chr2:8878150-8880298 REVERSE LENGTH=463 53 3e-07
AT5G36160.1 | chr5:14233261-14235129 REVERSE LENGTH=421 53 4e-07
>AT4G33680.1 | chr4:16171847-16174630 REVERSE LENGTH=462
Length = 461
Score = 502 bits (1292), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/409 (59%), Positives = 292/409 (71%), Gaps = 6/409 (1%)
Query: 31 RTSVLRNPNMEKLQKGYLFPEISIKREEHLKKYPDAKVISLGIGDTTEPIPSIVTSAMAE 90
+T V RN NM KLQ GYLFPEI+ +R HL KYPDA+VISLGIGDTTEPIP ++TSAMA+
Sbjct: 56 KTKVSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAK 115
Query: 91 YALALSTPEGYQGYGPEQGHKNLRKEIADKVYPDMGIKESEVFISDGAQCDIARLQTLFG 150
A LST EGY GYG EQG K LR IA Y +GI + +VF+SDGA+CDI+RLQ +FG
Sbjct: 116 KAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRLQVMFG 175
Query: 151 PNVTIAVQDPTFPGYVDNGVIMGQTGKAD-DGGRYAGIEYMRCAPENAFFPDLSRVRRTD 209
NVTIAVQDP++P YVD+ VIMGQTG+ + D +Y IEYMRC PEN FFPDLS V RTD
Sbjct: 176 SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTD 235
Query: 210 VIFFCSPNNPTGHAASREQLRQLVELARRNGSIIVFDXXXXXXXXXXXXXXXXXXXXXXP 269
+IFFCSPNNPTG AA+REQL QLVE A++NGSIIV+D P
Sbjct: 236 IIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYD----SAYAMYMSDDNPRSIFEIP 291
Query: 270 GAREVAIEVSSFSKFAGFTGVRLGWAVVPDELLYSDGVPVARDFDRVVCTCFNGASGIAQ 329
GA EVA+E +SFSK+AGFTGVRLGW V+P +LLYSDG PVA+DF+R++CTCFNGAS I+Q
Sbjct: 292 GAEEVAMETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQ 351
Query: 330 AGGVACLSTXXXXXXXXXXXXXXXXNARVLVETFRSLGKEVHGGGDAPYVWVRFPGRRSW 389
AG +ACL T N ++++TF SLG +V+GG +APYVWV FP + SW
Sbjct: 352 AGALACL-TPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQSSW 410
Query: 390 DVFAEILEKTHVITVXXXXXXXXXXXXIRVSAFNSRDKVLEACQRLKSF 438
DVFAEILEKTHV+T +RVSAF R+ +LEAC+R K
Sbjct: 411 DVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQL 459
>AT2G13810.1 | chr2:5768489-5772138 FORWARD LENGTH=457
Length = 456
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 291/416 (69%), Gaps = 8/416 (1%)
Query: 25 KIGGPRRTSVLRNPNMEKLQKGYLFPEISIKREEHLKKYPDAKVISLGIGDTTEPIPSIV 84
K+GG T ++RN N+EKL+ YLFPEI+ + EH++K+P+ ++ISLG GDTTEPIP +
Sbjct: 31 KLGG--STKLVRNVNLEKLKNNYLFPEINRRELEHIEKHPNVQLISLGTGDTTEPIPEQI 88
Query: 85 TSAMAEYALALSTPEGYQGYGPEQGHKNLRKEIADKVYPDMGIKESEVFISDGAQCDIAR 144
TS M+ +A LST EGY+GYG EQG+K LRK IA+ Y D+ +K +EVF+SDGAQ DI+R
Sbjct: 89 TSHMSNFAHGLSTVEGYRGYGLEQGNKTLRKAIAETFYRDLHVKSNEVFVSDGAQSDISR 148
Query: 145 LQTLFGPNVTIAVQDPTFPGYVDNGVIMGQTGK-ADDGGRYAGIEYMRCAPENAFFPDLS 203
LQ L G NVTIAVQDPTFP Y+D+ VI+GQTG + +Y + YM C P N+FFPDL+
Sbjct: 149 LQLLLGSNVTIAVQDPTFPAYIDSSVIIGQTGHFHEKTKKYQNVVYMPCGPNNSFFPDLA 208
Query: 204 RVRRTDVIFFCSPNNPTGHAASREQLRQLVELARRNGSIIVFDXXXXXXXXXXXXXXXXX 263
RTDVIFFCSPNNPTG+ ASR+QL QLV+ A+ NGSII+FD
Sbjct: 209 MTPRTDVIFFCSPNNPTGYVASRKQLHQLVDFAKTNGSIIIFD----SAYAAFIEDGSPR 264
Query: 264 XXXXXPGAREVAIEVSSFSKFAGFTGVRLGWAVVPDELLYSDGVPVARDFDRVVCTCFNG 323
PGAREVAIEVSSFSKFAGFTGVRLGW+++PDELLYS+G P+ DF R+V T FNG
Sbjct: 265 SIYEIPGAREVAIEVSSFSKFAGFTGVRLGWSIIPDELLYSNGFPIINDFHRIVTTSFNG 324
Query: 324 ASGIAQAGGVACLSTXXXXXXXXXXXXXXXXNARVLVETFRSLGKEVHGGGDAPYVWVRF 383
AS IAQAGG+ACLS+ N ++L++T SLG +V+GG +APY+WV F
Sbjct: 325 ASNIAQAGGLACLSS-GGLKEIRSVNNYYKENRKILMDTLVSLGLKVYGGVNAPYLWVHF 383
Query: 384 PGRRSWDVFAEILEKTHVITVXXXXXXXXXXXXIRVSAFNSRDKVLEACQRLKSFL 439
G +SWDVF EILE TH+ITV +R+S F RD ++EA +RL++F
Sbjct: 384 KGSKSWDVFNEILENTHIITVPGSGFGPGGEEYLRISGFGRRDHIVEASKRLQNFF 439
>AT4G28420.2 | chr4:14055687-14057409 FORWARD LENGTH=450
Length = 449
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 81 PSIVTSAMAEYALA--LSTPEGYQGYGPEQGHKNLRKEIADKVYPDM--GIKESEVFISD 136
P TS + E A+ L + +G YGP G R+ +AD V D+ +K ++VFI+
Sbjct: 74 PCYRTSILVENAVVDVLRSGKG-NSYGPAAGILPARQAVADYVNRDLTNKVKPNDVFITV 132
Query: 137 GAQCDI-ARLQTLFGPNVTIAVQDPTFPGYVDNGVIMGQTGKADDGGRYAGIEYMR--CA 193
G I LQ+L PN I + P++P Y V Y+G+E +
Sbjct: 133 GCNQGIEVVLQSLARPNANILLPRPSYPHYEARAV-------------YSGLEVRKFDLL 179
Query: 194 PENAFFPDLSRVR-----RTDVIFFCSPNNPTGHAASREQLRQLVELARRNGSIIVFD 246
PE + DL + T + +PNNP G+ S + L+++ E A++ G +++ D
Sbjct: 180 PEKEWEIDLPGIEAMADENTVAMVIINPNNPCGNVYSYDHLKKVAETAKKLGIMVITD 237
>AT5G53970.1 | chr5:21910676-21912594 FORWARD LENGTH=415
Length = 414
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 100/243 (41%), Gaps = 27/243 (11%)
Query: 67 KVISLGIGDTTEPIPSIVTSAMAEYALALS-TPEGYQGYGPEQGHKNLRKEIADKVYPDM 125
+VISLG+GD T T+ ++ A++ S + GY P G R+ IA+ + D+
Sbjct: 34 RVISLGMGDPTL-YSCFRTTQVSLQAVSDSLLSNKFHGYSPTVGLPQARRAIAEYLSRDL 92
Query: 126 GIKESE--VFISDGAQ--CDIARLQTLFGPNVTIAVQDPTFPGYVDNGVIMGQTGKADDG 181
K S+ VFI+ G D+A L L P I + P FP Y +
Sbjct: 93 PYKLSQDDVFITSGCTQAIDVA-LSMLARPRANILLPRPGFPIY-----------ELCAK 140
Query: 182 GRYAGIEYMRCAPENAFFPDLSRV-----RRTDVIFFCSPNNPTGHAASREQLRQLVELA 236
R+ + Y+ PEN + DL V T + +P NP G+ S + L ++ E A
Sbjct: 141 FRHLEVRYVDLLPENGWEIDLDAVEALADENTVALVVINPGNPCGNVYSYQHLMKIAESA 200
Query: 237 RRNGSIIVFDXXXXXXXXXXXXXXXXXXXXXXPGAREVAIEVSSFSKFAGFTGVRLGWAV 296
++ G +++ D G+ + + S SK G RLGW V
Sbjct: 201 KKLGFLVIADEVYGHLAFGSKPFVPMGVF----GSIVPVLTLGSLSKRWIVPGWRLGWFV 256
Query: 297 VPD 299
D
Sbjct: 257 TTD 259
>AT2G20610.1 | chr2:8878150-8880298 REVERSE LENGTH=463
Length = 462
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 27/191 (14%)
Query: 68 VISLGIGDTTEPIPSIVTSAMAEYALA--LSTPEGYQGYGPEQGHKNLRKEIADKVYPDM 125
++ LG GD + P T AE A+ L + +G YGP G R+ +AD + D+
Sbjct: 68 ILPLGHGDPSV-YPCFRTCIEAEDAVVDVLRSGKG-NSYGPGAGILPARRAVADYMNRDL 125
Query: 126 GIKES--EVFISDGAQCDIARL-QTLFGPNVTIAVQDPTFPGYVDNGVIMGQTGKADDGG 182
K + ++F++ G I + ++L PN I + P FP Y D
Sbjct: 126 PHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHY-------------DARA 172
Query: 183 RYAGIEYMR--CAPENAFFPDLSRVR-----RTDVIFFCSPNNPTGHAASREQLRQLVEL 235
Y+G+E + PE + DL + T + +PNNP G+ S + L+++ E
Sbjct: 173 AYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAET 232
Query: 236 ARRNGSIIVFD 246
AR+ G +++ D
Sbjct: 233 ARKLGIMVISD 243
>AT5G36160.1 | chr5:14233261-14235129 REVERSE LENGTH=421
Length = 420
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 25/190 (13%)
Query: 68 VISLGIGDTTEPIPSIVTSAMAEYALALST-PEGYQGYGPEQGHKNLRKEIADKVYPDMG 126
VI LG GD + P PS T A A+ + + Y G RK +A+ + D+
Sbjct: 44 VIPLGHGDPS-PFPSFRTDQAAVEAICDAVRSTKFNNYSSSSGVPVARKAVAEYLSSDLS 102
Query: 127 --IKESEVFISDGAQCDIARL-QTLFGPNVTIAVQDPTFPGYVDNGVIMGQTGKADDGGR 183
I ++V I+ G I L L P I + PT+P Y D
Sbjct: 103 YQISPNDVHITAGCVQAIEILISALAIPGANILLPRPTYPMY-------------DSRAA 149
Query: 184 YAGIE--YMRCAPENAFFPDLSRVR-----RTDVIFFCSPNNPTGHAASREQLRQLVELA 236
+ +E Y PEN + DL V +T I +P NP G+ SR+ L+++ E A
Sbjct: 150 FCQLEVRYFDLLPENGWDVDLDGVEALADDKTVAILVINPCNPCGNVFSRQHLQKIAETA 209
Query: 237 RRNGSIIVFD 246
+ G +++ D
Sbjct: 210 CKLGILVIAD 219
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,705,930
Number of extensions: 335084
Number of successful extensions: 680
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 7
Length of query: 440
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,310,137
Effective search space: 2808826306
Effective search space used: 2808826306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)