Os03g0299900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plastid aminotransferase (Fragment).
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Os03g0299900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Plastid aminotransferase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.44 | 0.392 | 10.3 | -0.0602 | 1.28 | 0.765 | 0.0198 | 0.436 | -0.587 | 20.6 | 25.56 | 240 | -- | -- |
| 69.49 | 0.388 | 10.3 | -0.108 | 1.28 | 0.805 | 0.0419 | -- | -0.595 | 20.6 | 25.57 | 239 | -- | -- |
| 69.37 | 0.388 | 10.3 | -0.0544 | 1.3 | 0.769 | -- | 0.514 | -0.583 | 20.6 | 25.6 | 200 | -- | -- |
| 69.45 | 0.388 | 10.3 | -0.113 | 1.3 | 0.816 | -- | -- | -0.598 | 20.6 | 25.6 | 202 | -- | -- |
| 131.66 | 0.534 | 10.3 | -0.257 | -- | 1.58 | -- | 0.468 | -0.656 | -- | 25.2 | 558 | -- | -- |
| 79.97 | 0.419 | 10.3 | 0.0271 | 1.49 | -- | 0.388 | -- | -0.556 | 19.8 | -- | -- | -- | -- |
| 80.4 | 0.42 | 10.3 | 0.0165 | 1.49 | -- | -- | -- | -0.556 | 19.8 | -- | -- | -- | -- |
| 130.59 | 0.532 | 10.3 | -0.284 | -- | 1.57 | -- | -- | -0.685 | -- | 25 | 550 | -- | -- |
| 69.77 | 0.389 | 10.3 | -- | 1.31 | 0.79 | -- | -- | -0.583 | 20.6 | 25.64 | 202 | -- | -- |
| 200.99 | 0.662 | 10.3 | -0.000707 | -- | -- | -- | -- | -0.577 | -- | -- | -- | -- | -- |
| 80.41 | 0.419 | 10.3 | -- | 1.49 | -- | -- | -- | -0.558 | 19.8 | -- | -- | -- | -- |
| 132.58 | 0.536 | 10.3 | -- | -- | 1.52 | -- | -- | -0.654 | -- | 25 | 544 | -- | -- |
| 200.99 | 0.662 | 10.3 | -- | -- | -- | -- | -- | -0.577 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 2 | 67.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 8 | 67.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 17 | 68.13 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 12 |
| 20 | 68.19 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 15 |
| 70 | 68.66 | radiation | 30 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 72 | 68.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 11 |
| 76 | 68.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 109 | 68.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 14 |
| 118 | 68.82 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 145 | 68.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 17 |
| 192 | 69.08 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 205 | 69.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 206 | 69.15 | radiation | 40 | 720 | < th | dose independent | rect. | 9 | 16 |
| 207 | 69.15 | temperature | 25 | 10 | > th | dose dependent | sin | 19 | NA |
| 233 | 69.19 | radiation | 40 | 720 | < th | dose independent | sin | 9 | NA |
| 235 | 69.20 | radiation | 40 | 720 | > th | dose independent | rect. | 9 | 3 |
| 236 | 69.20 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 16 |
| 241 | 69.21 | radiation | 30 | 720 | > th | dose dependent | sin | 9 | NA |
| 322 | 69.35 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 18 |
| 334 | 69.37 | radiation | 40 | 720 | > th | dose independent | sin | 8 | NA |
| 337 | 69.38 | radiation | 40 | 720 | < th | dose independent | rect. | 9 | 23 |
| 403 | 69.47 | radiation | 40 | 720 | < th | dose independent | rect. | 4 | 23 |
| 424 | 69.50 | radiation | 40 | 720 | < th | dose independent | sin | 20 | NA |
| 425 | 69.50 | radiation | 40 | 720 | < th | dose independent | rect. | 6 | 21 |
| 432 | 69.51 | radiation | 40 | 720 | < th | dose independent | rect. | 6 | 23 |
| 501 | 69.56 | radiation | 40 | 720 | < th | dose independent | rect. | 13 | 23 |
| 507 | 69.57 | radiation | 40 | 720 | < th | dose independent | rect. | 9 | 14 |
| 584 | 69.69 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 5 |
| 586 | 69.69 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 590 | 69.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 593 | 69.70 | radiation | 40 | 720 | < th | dose independent | rect. | 11 | 23 |
| 683 | 69.78 | radiation | 40 | 720 | < th | dose independent | no | NA | NA |
| 752 | 69.92 | radiation | 40 | 720 | < th | dose independent | rect. | 24 | 16 |
| 880 | 70.09 | radiation | 40 | 720 | < th | dose independent | rect. | 21 | 16 |
| 987 | 70.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 997 | 70.17 | radiation | 40 | 720 | > th | dose independent | no | NA | NA |