BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0286800 Os03g0286800|AK111707
(477 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0286800 Similar to WD and tetratricopeptide repeats pr... 961 0.0
Os10g0544500 WD40-like domain containing protein 431 e-121
Os06g0724500 WD40-like domain containing protein 343 2e-94
Os03g0187300 Quinonprotein alcohol dehydrogenase-like domai... 99 8e-21
Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding ... 80 4e-15
>Os03g0286800 Similar to WD and tetratricopeptide repeats protein 1
Length = 477
Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/477 (96%), Positives = 462/477 (96%)
Query: 1 MAVXXXXXXXXXXXXXXXVGRQEIGSSTPRASSRRISGSEGLVMRMHQYGKLRGHDGCVN 60
MAV VGRQEIGSSTPRASSRRISGSEGLVMRMHQYGKLRGHDGCVN
Sbjct: 1 MAVASEAACRRAASCFFEVGRQEIGSSTPRASSRRISGSEGLVMRMHQYGKLRGHDGCVN 60
Query: 61 TVSFNPAGNLLVSGSDDMDIILWDWLAKTQRLIYPSGHQENVFHARVMPFTDDSAIVTVA 120
TVSFNPAGNLLVSGSDDMDIILWDWLAKTQRLIYPSGHQENVFHARVMPFTDDSAIVTVA
Sbjct: 61 TVSFNPAGNLLVSGSDDMDIILWDWLAKTQRLIYPSGHQENVFHARVMPFTDDSAIVTVA 120
Query: 121 ADGQVRVGQLNEGGEVTTKQIGVHDDRAHKLAIEPGSPYIFYSCGEDGLVQHFDLRNDSP 180
ADGQVRVGQLNEGGEVTTKQIGVHDDRAHKLAIEPGSPYIFYSCGEDGLVQHFDLRNDSP
Sbjct: 121 ADGQVRVGQLNEGGEVTTKQIGVHDDRAHKLAIEPGSPYIFYSCGEDGLVQHFDLRNDSP 180
Query: 181 MKLFSCYSFSNSRRRVRLNTIAIDPWNPNYLSIGGSDEYVRVYDLRRIQLGASNDMNQPV 240
MKLFSCYSFSNSRRRVRLNTIAIDPWNPNYLSIGGSDEYVRVYDLRRIQLGASNDMNQPV
Sbjct: 181 MKLFSCYSFSNSRRRVRLNTIAIDPWNPNYLSIGGSDEYVRVYDLRRIQLGASNDMNQPV 240
Query: 241 DTFCPKHLMGGKVHITGIAYSYAREILVSYNDEHIYLFQNNMGLGPNPESAQAEFLDRLE 300
DTFCPKHLMGGKVHITGIAYSYAREILVSYNDEHIYLFQNNMGLGPNPESAQAEFLDRLE
Sbjct: 241 DTFCPKHLMGGKVHITGIAYSYAREILVSYNDEHIYLFQNNMGLGPNPESAQAEFLDRLE 300
Query: 301 QPQAYTGHRNFRTVKGVSFFGPNDEYVLSGSDCGNVFVWRKKGGELLRMMHGDKSVVNCI 360
QPQAYTGHRNFRTVKGVSFFGPNDEYVLSGSDCGNVFVWRKKGGELLRMMHGDKSVVNCI
Sbjct: 301 QPQAYTGHRNFRTVKGVSFFGPNDEYVLSGSDCGNVFVWRKKGGELLRMMHGDKSVVNCI 360
Query: 361 EPHPHFPFLATSGIDKTVKIWTPSANKVMSLPKNAKQIIASNKRAREIDASRPELTLSSD 420
EPHPHFPFLATSGIDKTVKIWTPSANKVMSLPKNAKQIIASNKRAREIDASRPELTLSSD
Sbjct: 361 EPHPHFPFLATSGIDKTVKIWTPSANKVMSLPKNAKQIIASNKRAREIDASRPELTLSSD 420
Query: 421 LIMHVLRLQRRQSELYREHEPATADLASDDDESFFAGFDDANRNVRSNSDPRECIVT 477
LIMHVLRLQRRQSELYREHEPATADLASDDDESFFAGFDDANRNVRSNSDPRECIVT
Sbjct: 421 LIMHVLRLQRRQSELYREHEPATADLASDDDESFFAGFDDANRNVRSNSDPRECIVT 477
>Os10g0544500 WD40-like domain containing protein
Length = 499
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/430 (52%), Positives = 286/430 (66%), Gaps = 28/430 (6%)
Query: 22 QEIGSSTPRASSRRISGSEGLVMRMHQYGKLRGHDGCVNTVSFNPAGNLLVSGSDDMDII 81
+E+G PR +RR + SE LVMR+ + KL H GCVNTV FN G+ L+SGSDD ++
Sbjct: 21 REVGLLLPRRFARRAAASEDLVMRLQVHRKLNRHTGCVNTVGFNADGDTLISGSDDQMVM 80
Query: 82 LWDWLAKTQRLIYPSGHQENVFHARVMPFTDDSAIVTVAADGQVRVGQLNEGGEVTTKQI 141
LWDW +L +PSGH NVF AR MP+T+D IVT AADG+VR+ ++ +GG+V T +
Sbjct: 81 LWDWDTGAIKLQFPSGHSNNVFQARFMPYTNDQTIVTCAADGEVRLAKIGDGGDVPTTLL 140
Query: 142 GVHDDRAHKLAIEPGSPYIFYSCGEDGLVQHFDLRNDSPMKLFSC---YSFSNSRRRVRL 198
G HD RAHKLAIEPGSPYIFYSCGEDGLVQHFDLR ++ KLF C S S + L
Sbjct: 141 GDHDGRAHKLAIEPGSPYIFYSCGEDGLVQHFDLRTNTATKLFQCRNSLSKSGHSSNIHL 200
Query: 199 NTIAIDPWNPNYLSIGGSDEYVRVYDLRRIQLGASNDMNQPVDTFCPKHLMGGK-VHITG 257
N I IDP NPN L++GGS+ Y RVYD+R+ + S+D P D +CP HL+G + V ITG
Sbjct: 201 NAITIDPRNPNLLAVGGSNCYARVYDIRKYKWDGSSDY--PSDCYCPPHLIGNRFVGITG 258
Query: 258 IAYSYAREILVSYNDEHIYLFQNNMGLGPNPES---------------AQAEFLDRLEQP 302
+A+S+ E+L+SYN+E+IYLF N GLGP+P+S + E +DR P
Sbjct: 259 LAFSHQSELLISYNNENIYLFPKNGGLGPDPKSSVKIEANKGSKSTIVSSGEDVDR-PAP 317
Query: 303 QAYTGHRNFRTVKGVSFFGPNDEYVLSGSDCGNVFVWRKKGGELLRMMHGDKSVVNCIEP 362
Y GHRN TVKGV+F GPN EYV SGSDCG +F+WRKK G+ LR M GD+ VVNCIEP
Sbjct: 318 LMYAGHRNCETVKGVTFIGPNHEYVASGSDCGRLFIWRKKDGKFLRAMEGDECVVNCIEP 377
Query: 363 HPHFPFLATSGIDKTVKIWTPSANKVMSLPKNAKQIIASNKRAREIDASRPELTLSSDLI 422
HPH +A+SGID VKIWTPSA + + N +++ +R + S PE +LI
Sbjct: 378 HPHTMTIASSGIDNDVKIWTPSATERAPV-VNIEELKPRKRRTKLWHFSLPE-----ELI 431
Query: 423 MHVLRLQRRQ 432
HVL +RRQ
Sbjct: 432 FHVLASRRRQ 441
>Os06g0724500 WD40-like domain containing protein
Length = 480
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 170/388 (43%), Positives = 236/388 (60%), Gaps = 21/388 (5%)
Query: 21 RQEIGSSTPRASSRRISGSEGLVMRMHQYGKLRGHDGCVNTVSFNPAGNLLVSGSDDMDI 80
+E+G P+ + + S+ V + +LR H GCVNT+SFN G+LL+SGSDD
Sbjct: 13 EREVGCLPPKLFANSVMASQDFVRSLGVQKRLRKHRGCVNTISFNEDGSLLLSGSDDRAA 72
Query: 81 ILWDWLAKTQRLIYPSGHQENVFHARVMPFTDDSAIVTVAADGQVRVGQLNEGGEVTTKQ 140
+LW+W T + +GH +NVFHA MPF+ D +I+T AADGQVR Q+ EGG V T +
Sbjct: 73 VLWNWQEGTPTFAFHTGHSDNVFHALFMPFSGDRSIITCAADGQVRHSQIQEGGRVITNE 132
Query: 141 IGVHDDRAHKLAIEPGSPYIFYSCGEDGLVQHFDLRNDSPMKLFSCYSFSN-SRRRVRLN 199
+ + HKLAIEPG+P+ F+SCG++G V FDLR +LF C + + L
Sbjct: 133 LVDTEVAVHKLAIEPGNPHTFFSCGDNGSVFLFDLREKYVAELFKCAEVDHFGGDTIELY 192
Query: 200 TIAIDPWNPNYLSIGGSDEYVRVYDLRRIQLGASNDMNQPVDTFCPKHLMG-GKVHITGI 258
IAIDP P+ ++ GSDEYVR+YD R+I + ++ +P++ FCP H+MG K I+G+
Sbjct: 193 AIAIDPRKPSCFAVAGSDEYVRIYDSRKIDVNGNSSFGRPIEYFCPPHMMGENKDGISGL 252
Query: 259 AYSYAREILVSYNDEHIYLFQNNMGLGPNPESAQAEFL-------------------DRL 299
A+S E+L SY+ ++IYLF GL N L D+L
Sbjct: 253 AFSQTSELLASYSYDNIYLFSREHGLHFNNIEVGKRLLMDEIEGDCHINTAPLPFCRDKL 312
Query: 300 EQPQAYTGHRNFRTVKGVSFFGPNDEYVLSGSDCGNVFVWRKKGGELLRMMHGDKSVVNC 359
PQ + GHRN T+KGV+F GPN +YV +GSDCG VF+WRKK GEL+R+M GDK +VNC
Sbjct: 313 PAPQIFKGHRNKHTMKGVNFLGPNCDYVTTGSDCGRVFIWRKKDGELMRVMKGDKQIVNC 372
Query: 360 IEPHPHFPFLATSGIDKTVKIWTPSANK 387
+E HP+ +A GIDK +KIW P ++
Sbjct: 373 VEQHPYGIVIANCGIDKDIKIWAPGGSE 400
>Os03g0187300 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 384
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 4/110 (3%)
Query: 299 LEQPQAYTGHRNFRT-VKGVSFFGPNDEYVLSGSDCGNVFVWRKKGGELLRMMHGDKSVV 357
++ Q Y H N T +K SF G E++ SGSD G F+W K+ G L++M+ GD +VV
Sbjct: 239 VDMKQRYVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVV 298
Query: 358 NCIEPHPHFPFLATSGIDKTVKIWTPSAN--KVMSLPK-NAKQIIASNKR 404
NCI+ HP+ +ATSGID T+K+WTP AN +++ P+ + +I +N+R
Sbjct: 299 NCIQSHPYDCAVATSGIDNTIKLWTPDANATSMIAGPEIDVSSVIENNQR 348
>Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP)
(U5 snRNP- specific 40 kDa protein) (38 kDa splicing
factor)
Length = 343
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 137/338 (40%), Gaps = 55/338 (16%)
Query: 52 LRGHDGCVNTVSFNPAGNLLVSGSDDMDIILWDWLAKTQRLIYPSGHQENVFHARVMPFT 111
L GH V + FNPAG ++ SGS D DI LW + + GH+ V + T
Sbjct: 49 LTGHQSAVYCMKFNPAGTVIASGSHDKDIFLWYVHGDCKNYMVLRGHKNAVLDLQWT--T 106
Query: 112 DDSAIVTVAADGQVRVGQLNEGGEVTTKQIGVHDDRAHKLAIEPGSPYIFYSCGEDGLVQ 171
D + I++ + D VRV + G +V K++ H + P + S +DG +
Sbjct: 107 DGTQIISASPDKTVRVWDVETGKQV--KKMAEHSSFVNSCCPARKWPPLVVSGSDDGTAK 164
Query: 172 HFDLRNDSPMKLF------SCYSFSNSRRRVRLNTIAIDPWNPNYLSIGGSDEYVRVYDL 225
+DLR ++ + SFS + +V GG D V+ +DL
Sbjct: 165 LWDLRQRGAIQTLPDKYQITAVSFSEAADKV---------------FTGGLDNDVKWWDL 209
Query: 226 RRIQLGASNDMNQPVDTFCPKHLMGGKVHITGIAYSY-AREILVSYNDEHIYLFQNNMGL 284
R+ ++ ++L G + ITG+ S +L + D + ++ L
Sbjct: 210 RKNEV--------------TEYLKGHQDMITGMQLSPDGSYLLTNAMDNELKIWD----L 251
Query: 285 GP-NPESAQAEFLDRLEQPQAYTGHR-NFRTVKGVSFFGPNDEYVLSGSDCGNVFVWRKK 342
P PE+ + L TGH+ NF + P++ V +GS V++W
Sbjct: 252 RPYAPENRNIKTL---------TGHQHNFEKNLLKCSWSPDNRKVTAGSADRMVYIWDTT 302
Query: 343 GGELLRMMHGDKSVVNCIEPHPHFPFLATSGIDKTVKI 380
+L + G VN HP P + + G DK + +
Sbjct: 303 SRRILYKLPGHNGSVNETAFHPTEPVIGSCGSDKQIYL 340
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,014,854
Number of extensions: 755415
Number of successful extensions: 2309
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2290
Number of HSP's successfully gapped: 5
Length of query: 477
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 372
Effective length of database: 11,553,331
Effective search space: 4297839132
Effective search space used: 4297839132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)