Os03g0286800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WD and tetratricopeptide repeats protein 1.
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Os03g0286800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WD and tetratricopeptide repeats protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.85 | 0.3 | 8.35 | -0.275 | 0.444 | 1.01 | -0.739 | 0.235 | -0.494 | 23.2 | 17.8 | 4169 | -- | -- |
| 40.91 | 0.298 | 8.35 | -0.307 | 0.442 | 0.979 | -0.74 | -- | -0.497 | 23.2 | 18.25 | 4149 | -- | -- |
| 43.13 | 0.306 | 8.35 | -0.248 | 0.459 | 1.01 | -- | 0.227 | -0.49 | 23 | 17.7 | 4237 | -- | -- |
| 43.16 | 0.306 | 8.35 | -0.299 | 0.451 | 0.993 | -- | -- | -0.5 | 23 | 17.98 | 4187 | -- | -- |
| 52.16 | 0.336 | 8.36 | -0.314 | -- | 1.12 | -- | -0.181 | -0.545 | -- | 17.45 | 2355 | -- | -- |
| 63.65 | 0.374 | 8.31 | 0.138 | 0.501 | -- | -0.698 | -- | -0.298 | 23.5 | -- | -- | -- | -- |
| 65.73 | 0.38 | 8.31 | 0.166 | 0.505 | -- | -- | -- | -0.295 | 23.4 | -- | -- | -- | -- |
| 52.17 | 0.336 | 8.35 | -0.26 | -- | 1.13 | -- | -- | -0.536 | -- | 17.1 | 2347 | -- | -- |
| 44.45 | 0.311 | 8.35 | -- | 0.46 | 0.813 | -- | -- | -0.457 | 23.1 | 20.02 | 3079 | -- | -- |
| 81.71 | 0.422 | 8.3 | 0.179 | -- | -- | -- | -- | -0.29 | -- | -- | -- | -- | -- |
| 66.46 | 0.381 | 8.31 | -- | 0.507 | -- | -- | -- | -0.313 | 23.4 | -- | -- | -- | -- |
| 50.53 | 0.331 | 8.34 | -- | -- | 1.23 | -- | -- | -0.486 | -- | 16.5 | 878 | -- | -- |
| 82.55 | 0.424 | 8.3 | -- | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.66 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 2 | 37.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 74 | 39.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 83 | 40.03 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 102 | 40.15 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 103 | 40.16 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 105 | 40.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 133 | 40.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 5 |
| 255 | 40.49 | temperature | 15 | 4320 | > th | dose dependent | sin | 10 | NA |
| 284 | 40.51 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 353 | 40.57 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 436 | 40.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |