BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0275300 Os03g0275300|J100031K07
         (165 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0275300  Conserved hypothetical protein                      268   2e-72
Os05g0112000  Zinc finger, RING-type domain containing protein     84   5e-17
Os01g0974400  Zinc finger, RING-type domain containing protein     82   1e-16

>Os03g0275300 Conserved hypothetical protein
          Length = 165

 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/165 (81%), Positives = 135/165 (81%)

Query: 1   VAIAELSSPCPIHQLKNSKMPARVFLSLHGGDDEFALSLSVCRRIPYEVAMKRGHVACAA 60
           VAIAELSSPCPIHQLKNSKMPARVFLSLHGGDDEFALSLSVCRRIPYEVAMKRGHVACAA
Sbjct: 1   VAIAELSSPCPIHQLKNSKMPARVFLSLHGGDDEFALSLSVCRRIPYEVAMKRGHVACAA 60

Query: 61  LLNPSSAEPLVWPSPLKFISELEPDAKXXXXXXXXXXXXXXXKRTLKGXXXXXXXXXXXX 120
           LLNPSSAEPLVWPSPLKFISELEPDAK               KRTLKG            
Sbjct: 61  LLNPSSAEPLVWPSPLKFISELEPDAKALLEAALMEANREREKRTLKGARSASPLALPSP 120

Query: 121 XXXDDGAHDAAISEVVPNCANFTSSTTPLLPSRHILDNDHGNNSS 165
              DDGAHDAAISEVVPNCANFTSSTTPLLPSRHILDNDHGNNSS
Sbjct: 121 SRSDDGAHDAAISEVVPNCANFTSSTTPLLPSRHILDNDHGNNSS 165



>Os05g0112000 Zinc finger, RING-type domain containing protein
          Length = 450

 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 45/65 (69%)

Query: 44  RIPYEVAMKRGHVACAALLNPSSAEPLVWPSPLKFISELEPDAKXXXXXXXXXXXXXXXK 103
           RIPY VA+KR H ACAALLNP+SAEP+VWPSPLKFISELEP+AK               K
Sbjct: 230 RIPYSVALKRNHGACAALLNPTSAEPMVWPSPLKFISELEPEAKALLEAALMEANREREK 289

Query: 104 RTLKG 108
           + L G
Sbjct: 290 KILNG 294



>Os01g0974400 Zinc finger, RING-type domain containing protein
          Length = 446

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 43/65 (66%)

Query: 44  RIPYEVAMKRGHVACAALLNPSSAEPLVWPSPLKFISELEPDAKXXXXXXXXXXXXXXXK 103
           RI Y VAM+RGH ACAALLNP++AEP+VWPSPLKFI ELE DAK               K
Sbjct: 232 RIAYAVAMRRGHRACAALLNPAAAEPIVWPSPLKFIGELEADAKALLEAALMEANREREK 291

Query: 104 RTLKG 108
           R L G
Sbjct: 292 RILHG 296



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,156,790
Number of extensions: 172998
Number of successful extensions: 359
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 3
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)