BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0274400 Os03g0274400|J080316K23
(68 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0274400 Hypothetical protein 140 2e-34
Os07g0137400 102 4e-23
Os10g0451400 97 3e-21
Os02g0508200 94 3e-20
Os08g0462000 93 4e-20
Os12g0186200 89 5e-19
Os05g0509650 89 7e-19
Os05g0381301 89 1e-18
Os05g0272001 84 2e-17
Os11g0256300 Zinc finger, GRF-type domain containing protein 82 6e-17
Os07g0103000 Hypothetical protein 82 7e-17
Os06g0245100 80 3e-16
Os04g0245800 77 4e-15
Os03g0615700 Conserved hypothetical protein 76 7e-15
Os03g0612800 75 9e-15
Os12g0198650 64 3e-11
>Os03g0274400 Hypothetical protein
Length = 68
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 RPAVSPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFFLLG 60
RPAVSPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFFLLG
Sbjct: 1 RPAVSPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFFLLG 60
Query: 61 ATGRQAIF 68
ATGRQAIF
Sbjct: 61 ATGRQAIF 68
>Os07g0137400
Length = 111
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/53 (86%), Positives = 50/53 (94%)
Query: 5 SPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
+PVPYRVGPM+YQPPVFC CKAKAARWISWSVDNPGRRYFKCR+A+ GG DFF
Sbjct: 17 APVPYRVGPMEYQPPVFCRCKAKAARWISWSVDNPGRRYFKCRNAQDGGCDFF 69
>Os10g0451400
Length = 171
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 1 RPAVSPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
+P SP+PYRVGP +Y+P V C C+ KAARWISWSVDNPGRRYFKCR+AR GG DF+
Sbjct: 16 QPYGSPIPYRVGPFEYEPAVLCRCELKAARWISWSVDNPGRRYFKCRNARKGGCDFY 72
>Os02g0508200
Length = 186
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 46/57 (80%)
Query: 1 RPAVSPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
R + +P+PYR GP +YQP V C+C AKAARWISWS DNPGRRYFKC DAR GG +F+
Sbjct: 15 RTSAAPIPYRAGPFEYQPAVLCNCGAKAARWISWSRDNPGRRYFKCSDARNGGCEFY 71
>Os08g0462000
Length = 171
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 RPAVSPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
+P SP+PYRVGP +Y+P V C C+ KAARWISWSVDNPG RYFKCR+AR GG DF+
Sbjct: 16 QPYGSPIPYRVGPFEYEPAVLCRCELKAARWISWSVDNPGCRYFKCRNARKGGCDFY 72
>Os12g0186200
Length = 172
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 47/55 (85%), Gaps = 2/55 (3%)
Query: 5 SPVPYRVGPMDYQPPVFCDCK--AKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
SPVPYRVGP++YQP V C C+ AKA RWISWS+DNPGRRY+KC++AR GG DF+
Sbjct: 18 SPVPYRVGPLEYQPAVMCRCRPLAKAVRWISWSMDNPGRRYYKCQNARQGGCDFW 72
>Os05g0509650
Length = 101
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 45/53 (84%)
Query: 5 SPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
SP+PYRVGP++YQP V C C +KAARWI WS DNPGRRYFKC DAR+GG DFF
Sbjct: 19 SPIPYRVGPLEYQPAVACRCGSKAARWILWSPDNPGRRYFKCADARSGGCDFF 71
>Os05g0381301
Length = 173
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%), Gaps = 2/54 (3%)
Query: 6 PVPYRVGPMDYQPPVFCDCK--AKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
PVPYRVGP++YQP V C C+ AKAARWISWS DNPGRRY+KC++AR GG DF+
Sbjct: 19 PVPYRVGPLEYQPAVMCRCRPPAKAARWISWSTDNPGRRYYKCQNARQGGCDFW 72
>Os05g0272001
Length = 172
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 5 SPVPYRVGPMDYQPPVFCDCK--AKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
SPV Y VGP++YQP V C C+ AKAARWISWS DNPGRRY+KC++AR GG DF+
Sbjct: 18 SPVRYWVGPLEYQPAVMCQCRPPAKAARWISWSTDNPGRRYYKCQNARQGGCDFW 72
>Os11g0256300 Zinc finger, GRF-type domain containing protein
Length = 111
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 41/52 (78%)
Query: 6 PVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
P+PYRVGP DYQ V CDC+ KAA WISWS DNP RRYFKCR+A+ GG F+
Sbjct: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFY 71
>Os07g0103000 Hypothetical protein
Length = 74
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 6 PVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDAR 50
P+P+R+GPM+YQP V C C+AKAARWISWS DNPGRRY+KCR+AR
Sbjct: 20 PIPHRMGPMEYQPTVLCRCRAKAARWISWSRDNPGRRYYKCRNAR 64
>Os06g0245100
Length = 130
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 44/55 (80%), Gaps = 2/55 (3%)
Query: 6 PVPYRVGPMDYQPPVFCDC--KAKAARWISWSVDNPGRRYFKCRDARAGGSDFFL 58
PV YRVGP++YQP V C C AKA WISWS+DNPGRRY+KC++AR GG DF++
Sbjct: 20 PVSYRVGPLNYQPAVMCRCCCPAKATWWISWSIDNPGRRYYKCQNAREGGCDFWV 74
>Os04g0245800
Length = 153
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 5 SPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
+P+P RVGP DYQP V C C AKAARWIS SVDNPGR Y++CR+ R G DFF
Sbjct: 19 APIPARVGPYDYQPAVMCRCGAKAARWISGSVDNPGRWYYRCRN-RGAGCDFF 70
>Os03g0615700 Conserved hypothetical protein
Length = 180
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 40/52 (76%)
Query: 6 PVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
P+PYRVGP++Y+P V C KAARWISW DNPG RYFKC +AR+G D+F
Sbjct: 20 PIPYRVGPLEYEPAVVCRYSNKAARWISWIPDNPGCRYFKCVNARSGCCDYF 71
>Os03g0612800
Length = 183
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 1 RPAVSPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
+ SP+ YRVGP++Y+P V C C KA RWIS DNPGR YFKC +AR+GG D+F
Sbjct: 15 HTSASPILYRVGPLEYEPAVACKCGNKAVRWISRISDNPGRWYFKCVNARSGGCDYF 71
>Os12g0198650
Length = 67
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 5 SPVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDAR 50
+P+P VGP +Y P V C AKAARWISW VDNP RRY KC + +
Sbjct: 19 APIPPHVGPFEYHPVVMCKGGAKAARWISWGVDNPSRRYHKCHNQK 64
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.143 0.499
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,129,990
Number of extensions: 111054
Number of successful extensions: 292
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 16
Length of query: 68
Length of database: 17,035,801
Length adjustment: 40
Effective length of query: 28
Effective length of database: 14,947,241
Effective search space: 418522748
Effective search space used: 418522748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)