BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0266000 Os03g0266000|AK068775
         (224 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0266000  Ovarian tumour, otubain domain containing protein   430   e-121
Os09g0487700  Ovarian tumour, otubain domain containing protein    87   1e-17
Os08g0506000  Ovarian tumour, otubain domain containing protein    82   3e-16
Os01g0900900  Ovarian tumour, otubain domain containing protein    74   9e-14

>Os03g0266000 Ovarian tumour, otubain domain containing protein
          Length = 224

 Score =  430 bits (1106), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/224 (94%), Positives = 211/224 (94%)

Query: 1   MAQAVRPCNATLLARLRDGEARFELLEDXXXXXXXXXXXXXVWPGLSCFSRVATSLRGGW 60
           MAQAVRPCNATLLARLRDGEARFELLED             VWPGLSCFSRVATSLRGGW
Sbjct: 1   MAQAVRPCNATLLARLRDGEARFELLEDSAAAAAASPAPAPVWPGLSCFSRVATSLRGGW 60

Query: 61  SGALNKVEHYGVQRVTGDGRCMFRALVKGMAKNKGIPLTSREEVQDADDLRMAVKEVICD 120
           SGALNKVEHYGVQRVTGDGRCMFRALVKGMAKNKGIPLTSREEVQDADDLRMAVKEVICD
Sbjct: 61  SGALNKVEHYGVQRVTGDGRCMFRALVKGMAKNKGIPLTSREEVQDADDLRMAVKEVICD 120

Query: 121 DETERQKYEEAVIAITVDESLRRYCHRIRRSDFWGGESELLVLSKLCRQPIIIYIPEREY 180
           DETERQKYEEAVIAITVDESLRRYCHRIRRSDFWGGESELLVLSKLCRQPIIIYIPEREY
Sbjct: 121 DETERQKYEEAVIAITVDESLRRYCHRIRRSDFWGGESELLVLSKLCRQPIIIYIPEREY 180

Query: 181 HGRGNGFIPIAEYGLEFSKDSKQWKKKVPVRLLYSGRNHYDLLV 224
           HGRGNGFIPIAEYGLEFSKDSKQWKKKVPVRLLYSGRNHYDLLV
Sbjct: 181 HGRGNGFIPIAEYGLEFSKDSKQWKKKVPVRLLYSGRNHYDLLV 224



>Os09g0487700 Ovarian tumour, otubain domain containing protein
          Length = 306

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 19/154 (12%)

Query: 70  YGVQRVTGDGRCMFRALVKGMAKNKGIPLTSREEVQDADDLRMAVKEVICDDETERQKYE 129
           Y V  + GDGRC+FR++  G     G       + + ADDLR  V +       E + + 
Sbjct: 160 YSVTGIPGDGRCLFRSVAHGACIRSGKRPDDDLQRKMADDLRAMVADEFIKRRAETEWF- 218

Query: 130 EAVIAITVDESLRRYCHRIRRSDFWGGESELLVLSKLCRQPIIIYIPEREYHGRGNGFIP 189
                  V+     Y  RIR+   WGGE ELL+ S + R PI +Y+ ++E      G I 
Sbjct: 219 -------VEGDFDAYVSRIRKPHVWGGEPELLMASHVLRMPITVYMHDKE----AGGLIA 267

Query: 190 IAEYGLEFSKDSKQWKKKVPVRLLYSGRNHYDLL 223
           IAEYG E+ K+        P+++L+ G  HYD L
Sbjct: 268 IAEYGQEYGKED-------PIQVLFHGFGHYDAL 294



>Os08g0506000 Ovarian tumour, otubain domain containing protein
          Length = 325

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 22/154 (14%)

Query: 70  YGVQRVTGDGRCMFRALVKGMAKNKGIPLTSREEVQD--ADDLRMAVKEVICDDETERQK 127
           Y V  + GDGRC+FR+++ G     G P+ + E++Q   AD+LR     ++ D+  +R++
Sbjct: 163 YSVTGIPGDGRCLFRSVIHGACIRAGRPIPN-EDLQRKLADELRA----MVADEFVKRRE 217

Query: 128 YEEAVIAITVDESLRRYCHRIRRSDFWGGESELLVLSKLCRQPIIIYIPEREYHGRGNGF 187
             E  I    D     Y   IR    WGGE EL + S +   PI +Y+ + +      G 
Sbjct: 218 ESEWFIEGDFDT----YVSHIRHPHVWGGEPELFMASHVLEMPITVYMHDED----AGGL 269

Query: 188 IPIAEYGLEFSKDSKQWKKKVPVRLLYSGRNHYD 221
           I IAEYG       +Q+ K+ P+++LY G  HYD
Sbjct: 270 ITIAEYG-------QQYGKEDPIQVLYDGFAHYD 296



>Os01g0900900 Ovarian tumour, otubain domain containing protein
          Length = 166

 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 22/152 (14%)

Query: 74  RVTGDGRCMFRALVKGMAKNKGIPLTSREEVQD--ADDLRMAVKEVICDDETERQKYEEA 131
           R+TGDGRC+FR++  G    +G    S + +Q   AD+LR  V      DE  R++ +  
Sbjct: 13  RITGDGRCLFRSVAYGACLRRGKQSPS-DSIQKELADELRSKVA-----DEFVRRRGDTE 66

Query: 132 VIAITVDESLRRYCHRIRRSDFWGGESELLVLSKLCRQPIIIYIPEREYHGRGNGFIPIA 191
                ++     Y  +IR+   WGGE ELL+ S + R PI +Y+    Y    +    IA
Sbjct: 67  WF---LEGDFESYVRQIRKPHVWGGEPELLMCSHVLRMPITVYM----YTKGSDSPRIIA 119

Query: 192 EYGLEFSKDSKQWKKKVPVRLLYSGRNHYDLL 223
           EYG E+ KD+       P+ +LY G  HYD L
Sbjct: 120 EYGQEYGKDN-------PICVLYDGYGHYDAL 144



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,369,944
Number of extensions: 303953
Number of successful extensions: 635
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 4
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)