BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0262500 Os03g0262500|AK120384
         (104 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0262500  Conserved hypothetical protein                      211   8e-56
Os01g0512100  Similar to Chaperone protein dnaJ 15 (Protein ...   126   3e-30
Os02g0741100  Similar to Chaperone protein dnaJ 16 (Protein ...    73   4e-14

>Os03g0262500 Conserved hypothetical protein
          Length = 104

 Score =  211 bits (538), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   GFFWHQSEHALSSYPSSSPFVLNVLEEAISGTDTLRSLPVGSSAPGKADKKCALFYGVTI 60
           GFFWHQSEHALSSYPSSSPFVLNVLEEAISGTDTLRSLPVGSSAPGKADKKCALFYGVTI
Sbjct: 1   GFFWHQSEHALSSYPSSSPFVLNVLEEAISGTDTLRSLPVGSSAPGKADKKCALFYGVTI 60

Query: 61  SEEQARSGIVVRVNSAAQSEFKLLFFEQEFDGGYGLALQASKLR 104
           SEEQARSGIVVRVNSAAQSEFKLLFFEQEFDGGYGLALQASKLR
Sbjct: 61  SEEQARSGIVVRVNSAAQSEFKLLFFEQEFDGGYGLALQASKLR 104



>Os01g0512100 Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE TO
           GRAVITY) (AtARG1) (AtJ15) (AtDjB15)
          Length = 403

 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 69/77 (89%)

Query: 23  NVLEEAISGTDTLRSLPVGSSAPGKADKKCALFYGVTISEEQARSGIVVRVNSAAQSEFK 82
           NVLEEA+SGT T+R LPVGSSA GK DK+ A FYGVTISEEQA+SGIVVRV SAAQS+FK
Sbjct: 126 NVLEEAMSGTVTVRPLPVGSSATGKVDKQSAHFYGVTISEEQAQSGIVVRVTSAAQSKFK 185

Query: 83  LLFFEQEFDGGYGLALQ 99
           LLFFEQE +GGYGLALQ
Sbjct: 186 LLFFEQEINGGYGLALQ 202



>Os02g0741100 Similar to Chaperone protein dnaJ 16 (Protein ARG1-LIKE1) (AtARL1)
           (AtJ16) (AtDjB16)
          Length = 442

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 58/90 (64%)

Query: 15  PSSSPFVLNVLEEAISGTDTLRSLPVGSSAPGKADKKCALFYGVTISEEQARSGIVVRVN 74
           P  +     VLEEA++G+  +  L +G S   K +K+ A FY V I++++A+ G+V RV 
Sbjct: 131 PIKTTVSATVLEEALNGSVGISQLELGQSVFRKVEKQSAHFYSVDITDKEAKMGLVCRVQ 190

Query: 75  SAAQSEFKLLFFEQEFDGGYGLALQASKLR 104
           S A+S+FKLL+FE E +GG  LALQ   ++
Sbjct: 191 STAKSKFKLLYFEPEENGGLSLALQEDSVK 220



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,328,412
Number of extensions: 115021
Number of successful extensions: 301
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 5
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)