Os03g0262500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0262500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.39 | 0.276 | 9.72 | -0.846 | 0.437 | -0.103 | 0.11 | 1.72 | 0.11 | 5.38 | 19.9 | 731 | -- | -- |
| 36.21 | 0.28 | 9.76 | -1.13 | 0.442 | -0.141 | -0.258 | -- | 0.0575 | 5.74 | 18.79 | 18873 | -- | -- |
| 34.4 | 0.273 | 9.72 | -0.853 | 0.44 | -0.0954 | -- | 1.65 | 0.107 | 5.44 | 19.79 | 780 | -- | -- |
| 36.22 | 0.28 | 9.75 | -1.14 | 0.454 | -0.181 | -- | -- | 0.0586 | 5.33 | 14.86 | 18790 | -- | -- |
| 40.33 | 0.296 | 9.75 | -0.951 | -- | -0.531 | -- | 1.7 | 0.0757 | -- | 24.83 | 289 | -- | -- |
| 36.59 | 0.284 | 9.77 | -1.23 | 0.448 | -- | -0.224 | -- | -0.000821 | 5.69 | -- | -- | -- | -- |
| 36.69 | 0.284 | 9.77 | -1.23 | 0.447 | -- | -- | -- | -0.000113 | 5.53 | -- | -- | -- | -- |
| 41.43 | 0.3 | 9.77 | -1.14 | -- | -0.456 | -- | -- | 0.0424 | -- | 24.93 | 229 | -- | -- |
| 45.3 | 0.313 | 9.68 | -- | 0.451 | -0.904 | -- | -- | 0.407 | 5.4 | -18.89 | 47520 | -- | -- |
| 47.06 | 0.321 | 9.77 | -1.22 | -- | -- | -- | -- | 0.0107 | -- | -- | -- | -- | -- |
| 76.86 | 0.41 | 9.74 | -- | 0.427 | -- | -- | -- | 0.137 | 5.65 | -- | -- | -- | -- |
| 55.9 | 0.348 | 9.68 | -- | -- | -0.887 | -- | -- | 0.412 | -- | -9.752 | 47520 | -- | -- |
| 86.32 | 0.434 | 9.74 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.13 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 3 |
| 33 | 32.17 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 36 | 32.20 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 2 | 5 |
| 42 | 32.25 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 56 | 32.41 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 5 |
| 64 | 32.45 | wind | 1.0 | 720 | > th | dose independent | rect. | 7 | 7 |
| 67 | 32.46 | wind | 1.0 | 720 | > th | dose independent | rect. | 17 | 22 |
| 69 | 32.48 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 7 |
| 106 | 32.63 | wind | 1.0 | 720 | > th | dose independent | rect. | 23 | 20 |
| 121 | 32.69 | temperature | 20.0 | 720 | < th | dose independent | sin | 7 | NA |
| 134 | 32.73 | temperature | 15.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 152 | 32.79 | wind | 3.0 | 270 | > th | dose independent | rect. | 24 | 14 |
| 166 | 32.82 | wind | 1.0 | 720 | > th | dose independent | sin | 2 | NA |
| 197 | 32.89 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 12 |
| 205 | 32.91 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 11 |
| 214 | 32.94 | wind | 3.0 | 270 | > th | dose independent | rect. | 11 | 2 |
| 218 | 32.94 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 226 | 32.95 | wind | 1.0 | 720 | > th | dose dependent | rect. | 24 | 14 |
| 232 | 32.96 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 257 | 33.00 | temperature | 20.0 | 10 | > th | dose independent | sin | 9 | NA |
| 277 | 33.02 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 314 | 33.09 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 10 |
| 315 | 33.09 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 12 |
| 325 | 33.10 | radiation | 40.0 | 90 | < th | dose independent | rect. | 16 | 20 |
| 326 | 33.10 | temperature | 25.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 388 | 33.17 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 419 | 33.20 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 426 | 33.20 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 429 | 33.21 | wind | 1.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 454 | 33.25 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 474 | 33.26 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 14 |
| 497 | 33.28 | temperature | 20.0 | 720 | > th | dose independent | sin | 4 | NA |
| 498 | 33.28 | radiation | 1.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 513 | 33.28 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 581 | 33.33 | radiation | 20.0 | 90 | < th | dose independent | rect. | 16 | 19 |
| 611 | 33.35 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 637 | 33.37 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 641 | 33.37 | wind | 1.0 | 270 | > th | dose dependent | rect. | 11 | 3 |
| 675 | 33.40 | radiation | 20.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 690 | 33.40 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 691 | 33.41 | wind | 1.0 | 720 | > th | dose independent | sin | 11 | NA |
| 699 | 33.41 | wind | 1.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 705 | 33.42 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 714 | 33.42 | wind | 1.0 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 728 | 33.43 | temperature | 30.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 782 | 33.46 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 808 | 33.48 | wind | 1.0 | 720 | > th | dose independent | rect. | 22 | 7 |
| 813 | 33.48 | radiation | 20.0 | 270 | < th | dose independent | rect. | 14 | 20 |
| 832 | 33.49 | wind | 1.0 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 877 | 33.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 21 |
| 947 | 33.54 | wind | 1.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 974 | 33.55 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 994 | 33.56 | temperature | 30.0 | 270 | < th | dose dependent | sin | 3 | NA |