BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0262500 Os03g0262500|AK120384
         (104 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68370.1  | chr1:25632046-25634527 REVERSE LENGTH=411          115   6e-27
AT1G24120.1  | chr1:8529283-8531946 REVERSE LENGTH=437             80   2e-16
AT1G59980.1  | chr1:22081069-22083491 FORWARD LENGTH=415           73   3e-14

>AT1G68370.1 | chr1:25632046-25634527 REVERSE LENGTH=411
          Length = 410

 Score =  115 bits (287), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query: 15  PSSSPFVLNVLEEAISGTDTLRSLPVGSSAPGKADKKCALFYGVTISEEQARSGIVVRVN 74
           P  +    NVLEEA++GT T+R LP+G+S  GK +K+CA F+GVTISE+QA SG+VVRV 
Sbjct: 117 PIKTTVSANVLEEAMNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTISEQQAESGVVVRVT 176

Query: 75  SAAQSEFKLLFFEQEFDGGYGLALQASK 102
           S AQS+FKLL+FEQ+  GGYGLALQ  +
Sbjct: 177 STAQSKFKLLYFEQDSSGGYGLALQEER 204



>AT1G24120.1 | chr1:8529283-8531946 REVERSE LENGTH=437
          Length = 436

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 59/90 (65%)

Query: 15  PSSSPFVLNVLEEAISGTDTLRSLPVGSSAPGKADKKCALFYGVTISEEQARSGIVVRVN 74
           P  +     +LEEA++G  ++  L +G +   K +K+CA FY VTISEE+  +G+V RV 
Sbjct: 120 PIKTSVSATILEEALNGRVSVDPLVLGQAVSKKVEKQCAHFYAVTISEEEVSAGLVCRVE 179

Query: 75  SAAQSEFKLLFFEQEFDGGYGLALQASKLR 104
           S+++S+FKLL+F+QE + G  LALQ    R
Sbjct: 180 SSSKSKFKLLYFDQEANSGLSLALQEDSKR 209



>AT1G59980.1 | chr1:22081069-22083491 FORWARD LENGTH=415
          Length = 414

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 56/77 (72%)

Query: 23  NVLEEAISGTDTLRSLPVGSSAPGKADKKCALFYGVTISEEQARSGIVVRVNSAAQSEFK 82
           N+L EA++GT T   L VG     K +K+ A FY VT++EE+A+ G++ +V+S+A+++FK
Sbjct: 131 NLLGEALNGTVTTLPLMVGQVVSRKVEKQSAHFYSVTLTEEEAQDGLICKVHSSAKNKFK 190

Query: 83  LLFFEQEFDGGYGLALQ 99
           LL+F+Q  +GG  LALQ
Sbjct: 191 LLYFDQVENGGLSLALQ 207



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,174,195
Number of extensions: 77251
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 3
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)