BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0240900 Os03g0240900|AK073420
         (571 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0240900  Conserved hypothetical protein                     1083   0.0  
Os07g0454400  Conserved hypothetical protein                      255   6e-68
Os12g0586400  Conserved hypothetical protein                      165   7e-41
Os05g0375900                                                      129   4e-30

>Os03g0240900 Conserved hypothetical protein
          Length = 571

 Score = 1083 bits (2800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/571 (92%), Positives = 530/571 (92%)

Query: 1   MREAVTVQVGGFANYVGSHFWNFQDELLGLXXXXXXXXVFKNDALDMDVLYRSGETHQGI 60
           MREAVTVQVGGFANYVGSHFWNFQDELLGL        VFKNDALDMDVLYRSGETHQGI
Sbjct: 1   MREAVTVQVGGFANYVGSHFWNFQDELLGLADDPDADPVFKNDALDMDVLYRSGETHQGI 60

Query: 61  PTYCPXXXXXXXXXXXXXXXXXXXXXQTSASADQLNVATWSGSVTRSVSKPHGRNLFLQS 120
           PTYCP                     QTSASADQLNVATWSGSVTRSVSKPHGRNLFLQS
Sbjct: 61  PTYCPRLVSVGSRGSLGSLSSSGNLGQTSASADQLNVATWSGSVTRSVSKPHGRNLFLQS 120

Query: 121 LVEEGQNPSTSNGASNSQKSVEDKDLIDCLENSVNFWTDYSKVQYHPQSLYELHGSWTDF 180
           LVEEGQNPSTSNGASNSQKSVEDKDLIDCLENSVNFWTDYSKVQYHPQSLYELHGSWTDF
Sbjct: 121 LVEEGQNPSTSNGASNSQKSVEDKDLIDCLENSVNFWTDYSKVQYHPQSLYELHGSWTDF 180

Query: 181 DKFDNYGSAQEVVSDWSQIEEMNERLRFFVEECDHIQGIQFIVDDSGGFSSVAAQFLENI 240
           DKFDNYGSAQEVVSDWSQIEEMNERLRFFVEECDHIQGIQFIVDDSGGFSSVAAQFLENI
Sbjct: 181 DKFDNYGSAQEVVSDWSQIEEMNERLRFFVEECDHIQGIQFIVDDSGGFSSVAAQFLENI 240

Query: 241 ADDYTNTPVLLYCVRDPMTLGSSRRNQRESIMRALHDAVSFSKLSSFCNLMVPIGPPXXX 300
           ADDYTNTPVLLYCVRDPMTLGSSRRNQRESIMRALHDAVSFSKLSSFCNLMVPIGPP   
Sbjct: 241 ADDYTNTPVLLYCVRDPMTLGSSRRNQRESIMRALHDAVSFSKLSSFCNLMVPIGPPSLS 300

Query: 301 XXXXXXXXXIQDEKPFHASAVCAAAIHSITVPFRLQRTGPSSDLAHSSGNLDIGELLHIL 360
                    IQDEKPFHASAVCAAAIHSITVPFRLQRTGPSSDLAHSSGNLDIGELLHIL
Sbjct: 301 RSYMSSYLYIQDEKPFHASAVCAAAIHSITVPFRLQRTGPSSDLAHSSGNLDIGELLHIL 360

Query: 361 SDQGRQNMVTALDVAMPAPSLTDRDAMGNIEMKLHSLTPEISDEDEDPYSVESLVVHGAL 420
           SDQGRQNMVTALDVAMPAPSLTDRDAMGNIEMKLHSLTPEISDEDEDPYSVESLVVHGAL
Sbjct: 361 SDQGRQNMVTALDVAMPAPSLTDRDAMGNIEMKLHSLTPEISDEDEDPYSVESLVVHGAL 420

Query: 421 DKGGQRTSISQVKGSVCSVYEARETKPKFSHLSASLCPLPVPLPFPSIFRGNIGRHGEIL 480
           DKGGQRTSISQVKGSVCSVYEARETKPKFSHLSASLCPLPVPLPFPSIFRGNIGRHGEIL
Sbjct: 421 DKGGQRTSISQVKGSVCSVYEARETKPKFSHLSASLCPLPVPLPFPSIFRGNIGRHGEIL 480

Query: 481 SDHAEESQPKGSLDIESIPMAARLRSSSAVLPFIERRSGSLQKHGVARGAIGSLVLRDWG 540
           SDHAEESQPKGSLDIESIPMAARLRSSSAVLPFIERRSGSLQKHGVARGAIGSLVLRDWG
Sbjct: 481 SDHAEESQPKGSLDIESIPMAARLRSSSAVLPFIERRSGSLQKHGVARGAIGSLVLRDWG 540

Query: 541 FGREEVEDMAEHLAKLLGPFHPEMDLTSDSD 571
           FGREEVEDMAEHLAKLLGPFHPEMDLTSDSD
Sbjct: 541 FGREEVEDMAEHLAKLLGPFHPEMDLTSDSD 571



>Os07g0454400 Conserved hypothetical protein
          Length = 133

 Score =  255 bits (652), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 124/128 (96%), Positives = 126/128 (98%)

Query: 387 MGNIEMKLHSLTPEISDEDEDPYSVESLVVHGALDKGGQRTSISQVKGSVCSVYEARETK 446
           +GNIEMKLHSLTPEISDEDEDPYSVESLVVHGALD+GGQRTSISQVK SVCSVYEARETK
Sbjct: 6   LGNIEMKLHSLTPEISDEDEDPYSVESLVVHGALDRGGQRTSISQVKDSVCSVYEARETK 65

Query: 447 PKFSHLSASLCPLPVPLPFPSIFRGNIGRHGEILSDHAEESQPKGSLDIESIPMAARLRS 506
           PKFSHLSASLCPLPVPLPFPSIFRGNIGRHGEILSDHAEESQPKGSLDIESIPMAARLRS
Sbjct: 66  PKFSHLSASLCPLPVPLPFPSIFRGNIGRHGEILSDHAEESQPKGSLDIESIPMAARLRS 125

Query: 507 SSAVLPFI 514
           SS VLPFI
Sbjct: 126 SSTVLPFI 133



>Os12g0586400 Conserved hypothetical protein
          Length = 97

 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 217 QGIQFIVDDSGGFSSVAAQFLENIADDYTNTPVLLYCVRDPMTLGSSRRNQRESIMRALH 276
           QGIQFIVDDSGGFSSVAAQFLENIADDYTNT VLLYCVRDPMTLG SRRNQRESIMRALH
Sbjct: 7   QGIQFIVDDSGGFSSVAAQFLENIADDYTNTLVLLYCVRDPMTLGPSRRNQRESIMRALH 66

Query: 277 DAVSFSKLSSFCNLMVPIGPP 297
           DAVSFSKLSSFCNLMVPIGPP
Sbjct: 67  DAVSFSKLSSFCNLMVPIGPP 87



>Os05g0375900 
          Length = 90

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 73/113 (64%), Gaps = 29/113 (25%)

Query: 47  MDVLYRSGETHQGIPTYCPXXXXXXXXXXXXXXXXXXXXXQTSASADQLNVATWSGSVTR 106
           MD+LYRS E HQG+PTYC                                    SG+VTR
Sbjct: 1   MDILYRSSEMHQGVPTYCHGW-----------------------------FCLLSGNVTR 31

Query: 107 SVSKPHGRNLFLQSLVEEGQNPSTSNGASNSQKSVEDKDLIDCLENSVNFWTD 159
           SVSKPHGRNLFLQSLVEEGQNPSTSNGASNSQK+VEDKDL+DCLEN VNFW D
Sbjct: 32  SVSKPHGRNLFLQSLVEEGQNPSTSNGASNSQKNVEDKDLLDCLENGVNFWMD 84



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,703,051
Number of extensions: 781982
Number of successful extensions: 2033
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2031
Number of HSP's successfully gapped: 4
Length of query: 571
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 465
Effective length of database: 11,501,117
Effective search space: 5348019405
Effective search space used: 5348019405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)