Os07g0454400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0454400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.05 | 0.221 | 10.1 | 0.423 | 0.351 | 0.332 | -0.0258 | -1.05 | 0.362 | 18.7 | 28.99 | 342 | -- | -- |
| 22.65 | 0.222 | 10.1 | 0.308 | 0.374 | 0.283 | 0.115 | -- | 0.337 | 19 | 28.8 | 413 | -- | -- |
| 22.03 | 0.219 | 10.1 | 0.43 | 0.358 | 0.34 | -- | -1.08 | 0.362 | 18.7 | 28.9 | 365 | -- | -- |
| 22.66 | 0.222 | 10.1 | 0.29 | 0.354 | 0.266 | -- | -- | 0.331 | 18.9 | 28.7 | 396 | -- | -- |
| 26.2 | 0.24 | 10.1 | 0.348 | -- | 0.0988 | -- | -0.693 | 0.331 | -- | 28.9 | 365 | -- | -- |
| 24.4 | 0.232 | 10.1 | 0.243 | 0.225 | -- | 0.0156 | -- | 0.303 | 19.9 | -- | -- | -- | -- |
| 24.4 | 0.231 | 10.1 | 0.242 | 0.225 | -- | -- | -- | 0.303 | 19.9 | -- | -- | -- | -- |
| 26.15 | 0.238 | 10.1 | 0.283 | -- | 0.144 | -- | -- | 0.293 | -- | 29.88 | 5922 | -- | -- |
| 24.75 | 0.232 | 10.1 | -- | 0.314 | 0.206 | -- | -- | 0.291 | 19 | 28.89 | 335 | -- | -- |
| 27.16 | 0.244 | 10.1 | 0.24 | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
| 25.94 | 0.238 | 10.1 | -- | 0.224 | -- | -- | -- | 0.276 | 20 | -- | -- | -- | -- |
| 28.1 | 0.247 | 10.1 | -- | -- | 0.108 | -- | -- | 0.26 | -- | 30.4 | 5919 | -- | -- |
| 28.68 | 0.25 | 10.1 | -- | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 4 | 21.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 14 | 21.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 25 | 21.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 13 |
| 52 | 21.94 | temperature | 30 | 10 | < th | dose independent | rect. | 9 | 7 |
| 58 | 21.96 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 92 | 22.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 125 | 22.13 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 151 | 22.19 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 152 | 22.19 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 10 |
| 158 | 22.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 193 | 22.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 203 | 22.28 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 206 | 22.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 227 | 22.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 6 |
| 232 | 22.31 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 235 | 22.32 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 15 |
| 242 | 22.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 245 | 22.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 272 | 22.33 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 273 | 22.34 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 8 |
| 281 | 22.35 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 282 | 22.35 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 6 |
| 299 | 22.36 | temperature | 30 | 10 | < th | dose independent | rect. | 22 | 18 |
| 300 | 22.36 | humidity | 80 | 30 | < th | dose independent | rect. | 12 | 20 |
| 314 | 22.37 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 372 | 22.42 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 7 |
| 377 | 22.42 | temperature | 20 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 381 | 22.42 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 400 | 22.44 | temperature | 30 | 10 | < th | dose independent | rect. | 20 | 20 |
| 478 | 22.48 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 484 | 22.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 531 | 22.50 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 534 | 22.51 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 21 |
| 575 | 22.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 577 | 22.53 | humidity | 80 | 30 | < th | dose independent | rect. | 12 | 10 |
| 592 | 22.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 600 | 22.54 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 640 | 22.55 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 738 | 22.60 | humidity | 80 | 30 | < th | dose independent | rect. | 12 | 18 |
| 743 | 22.60 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 774 | 22.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 22 |
| 809 | 22.63 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 10 |
| 832 | 22.64 | humidity | 80 | 30 | < th | dose independent | rect. | 12 | 16 |
| 835 | 22.64 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 865 | 22.65 | temperature | 25 | 30 | > th | dose independent | rect. | 12 | 8 |
| 902 | 22.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 11 |
| 903 | 22.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 13 |
| 919 | 22.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 922 | 22.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 993 | 22.69 | temperature | 25 | 10 | > th | dose dependent | sin | 21 | NA |