BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0235100 Os03g0235100|AK070766
         (246 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0235100  Similar to Pg4                                      501   e-142
Os01g0775600  Lissencephaly type-1-like homology motif domai...    85   5e-17
Os02g0556600  Similar to Pherophorin-dz1 protein precursor         74   7e-14

>Os03g0235100 Similar to Pg4
          Length = 246

 Score =  501 bits (1289), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MFLSRIVLRDLDSIDSPAASMASSKKLVTRDEWERKLRDVKIRKEDMNRLVMNFLVTEGF 60
           MFLSRIVLRDLDSIDSPAASMASSKKLVTRDEWERKLRDVKIRKEDMNRLVMNFLVTEGF
Sbjct: 1   MFLSRIVLRDLDSIDSPAASMASSKKLVTRDEWERKLRDVKIRKEDMNRLVMNFLVTEGF 60

Query: 61  VDAADKFRVESGTQPDIDLATITDRMEVKRAVQSGNVQEAIEKINDLNPTILDTNPQLYF 120
           VDAADKFRVESGTQPDIDLATITDRMEVKRAVQSGNVQEAIEKINDLNPTILDTNPQLYF
Sbjct: 61  VDAADKFRVESGTQPDIDLATITDRMEVKRAVQSGNVQEAIEKINDLNPTILDTNPQLYF 120

Query: 121 HLQQQKLIELIRAGKINEALEFAQEELAPRGEENQVFLEEIEKTVALLVFEDIKNCPYGE 180
           HLQQQKLIELIRAGKINEALEFAQEELAPRGEENQVFLEEIEKTVALLVFEDIKNCPYGE
Sbjct: 121 HLQQQKLIELIRAGKINEALEFAQEELAPRGEENQVFLEEIEKTVALLVFEDIKNCPYGE 180

Query: 181 LLDVSQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWTQNQLDEKAAYPRINNFSTAA 240
           LLDVSQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWTQNQLDEKAAYPRINNFSTAA
Sbjct: 181 LLDVSQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWTQNQLDEKAAYPRINNFSTAA 240

Query: 241 LEDPAI 246
           LEDPAI
Sbjct: 241 LEDPAI 246



>Os01g0775600 Lissencephaly type-1-like homology motif domain containing protein
          Length = 216

 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 5/180 (2%)

Query: 35  RKLRDVKIRKEDMNRLVMNFLVTEGFVDAADKFRVESGTQPDIDLATITD-RMEVKRAVQ 93
           R   +V +   D+  +V+++L+   F + A+ F   +G +  +D     D R  +   V 
Sbjct: 7   RLYENVSVSDNDVRNIVLSYLMHNCFKETAETFLSSTGLELPVDYTVDVDKRKAIFSFVL 66

Query: 94  SGNVQEAIEKINDLNPTILDTNPQLYFHLQQQKLIELIRAGKINEALEFAQEELAPRGEE 153
            GN  +AI+   +L P +L+ +  L+F L     IEL+R+ K  EALEF Q++L P G+ 
Sbjct: 67  EGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELVRSRKCTEALEFGQKKLTPFGKV 126

Query: 154 NQVFLEEIEKTVALLVFEDIKNCPYGELLDVSQRLKTASEVNAAILTSQSHEKDPKLPSL 213
            + ++E++E  +ALL +E+ +  P   LL    R   A  +N A+L   +H   P   SL
Sbjct: 127 PK-YVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVADSLNRAVL---AHANRPAYSSL 182



>Os02g0556600 Similar to Pherophorin-dz1 protein precursor
          Length = 469

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 97/182 (53%), Gaps = 14/182 (7%)

Query: 50  LVMNFLVTEGFVDAADKFRVESGTQPDID----------LATITDRMEVKRAVQSGNVQE 99
           +V ++L+  G+ D  + F + S T P  +          +  ++ R  +++ + SG++  
Sbjct: 253 IVRSYLLHYGYQDTLNSFDMASETDPPSNHQNGYGEPPEMYGLSHRKLLRQLIMSGDIDS 312

Query: 100 AIEKINDLNPTIL-DTNPQLYFHLQQQKLIELIRAGKINEALEFAQEELAPRGEENQVFL 158
           A +K+ +  P ++ D    + F L  Q+ IE I AG++ +A+++A+  LA     ++ F 
Sbjct: 313 AFKKLGEWYPQVIKDETSIICFLLHSQRFIEFIGAGQLEDAVKYARSNLA-NFLTHKAFD 371

Query: 159 EEIEKTVALLVFEDIKNCPYGELLDVSQRLKTASEVNAAILTSQSHEKDPK--LPSLLKM 216
             ++++VALL +E       G LLD  QR   A  VNAA+L++  + KDP+  L S L+ 
Sbjct: 372 GLLKESVALLAYEKPAESCIGYLLDSPQREFVADAVNAAVLSTNPNMKDPESCLYSCLEK 431

Query: 217 LI 218
           L+
Sbjct: 432 LL 433



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,007,050
Number of extensions: 249560
Number of successful extensions: 794
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 3
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)