Os03g0235100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pg4.
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Os03g0235100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pg4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.75 | 0.248 | 10.2 | -1.91 | 0.252 | -3.55 | -0.0175 | 18.7 | -0.216 | 9.2 | 1000 | 278 | -- | -- |
| 32.48 | 0.267 | 9.99 | -0.751 | 0.242 | -0.204 | -0.0517 | -- | -0.218 | 8.92 | 1000 | 278 | -- | -- |
| 27.75 | 0.245 | 10.2 | -1.91 | 0.252 | -3.55 | -- | 18.7 | -0.216 | 9.21 | 1000 | 279 | -- | -- |
| 32.29 | 0.265 | 9.99 | -0.75 | 0.244 | -0.236 | -- | -- | -0.22 | 9.02 | 999.9 | 239 | -- | -- |
| 31.38 | 0.261 | 10.2 | -1.89 | -- | -3.6 | -- | 18.9 | -0.215 | -- | 999.8 | 273 | -- | -- |
| 33.61 | 0.272 | 9.99 | -0.715 | 0.243 | -- | -0.0449 | -- | -0.232 | 9 | -- | -- | -- | -- |
| 33.62 | 0.272 | 9.99 | -0.716 | 0.243 | -- | -- | -- | -0.232 | 9 | -- | -- | -- | -- |
| 34.21 | 0.272 | 10 | -0.74 | -- | -0.547 | -- | -- | -0.216 | -- | 996.5 | 144 | -- | -- |
| 45.88 | 0.315 | 9.96 | -- | 0.262 | -0.133 | -- | -- | -0.103 | 8.75 | 1005 | 183 | -- | -- |
| 37.02 | 0.284 | 10 | -0.716 | -- | -- | -- | -- | -0.23 | -- | -- | -- | -- | -- |
| 47.14 | 0.321 | 9.97 | -- | 0.243 | -- | -- | -- | -0.152 | 9.22 | -- | -- | -- | -- |
| 48.75 | 0.325 | 9.98 | -- | -- | -0.472 | -- | -- | -0.138 | -- | 996.5 | 173 | -- | -- |
| 50.56 | 0.332 | 9.98 | -- | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.11 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 10 | 21 |
| 13 | 27.42 | temperature | 30 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 16 | 27.48 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 5 |
| 26 | 27.55 | temperature | 30 | 720 | > th | dose independent | rect. | 10 | 7 |
| 55 | 27.65 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 71 | 27.66 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 2 |
| 128 | 27.74 | temperature | 30 | 720 | > th | dose independent | sin | 0 | NA |
| 131 | 27.74 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 22 | 23 |
| 133 | 27.75 | atmosphere | 1000 | 270 | > th | dose independent | no | NA | NA |
| 136 | 27.75 | temperature | 30 | 720 | > th | dose dependent | sin | 1 | NA |
| 143 | 27.77 | atmosphere | 1000 | 270 | < th | dose independent | no | NA | NA |
| 145 | 27.77 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 23 |
| 176 | 27.84 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 23 |
| 219 | 27.87 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 220 | 27.87 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 345 | 27.93 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 469 | 27.95 | temperature | 30 | 720 | < th | dose independent | sin | 22 | NA |
| 491 | 27.96 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 492 | 27.96 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 500 | 27.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 501 | 27.98 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 11 |
| 505 | 27.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 528 | 28.01 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 530 | 28.01 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 13 |
| 533 | 28.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 534 | 28.02 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 23 |
| 540 | 28.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 542 | 28.04 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 587 | 28.07 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 7 |
| 588 | 28.07 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 23 |
| 620 | 28.09 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 9 |
| 630 | 28.09 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 18 |
| 635 | 28.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 657 | 28.11 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 671 | 28.14 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 20 |
| 687 | 28.15 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 15 |
| 726 | 28.20 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 761 | 28.21 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 17 |
| 775 | 28.23 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 796 | 28.23 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 845 | 28.26 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 894 | 28.29 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 897 | 28.29 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 964 | 28.31 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 20 |
| 967 | 28.31 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 23 |
| 969 | 28.31 | temperature | 30 | 4320 | > th | dose dependent | sin | 7 | NA |