BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0221200 Os03g0221200|AK068002
(282 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0221200 Similar to Homocysteine S-methyltransferase 1 ... 561 e-160
Os12g0607000 Similar to Homocysteine S-methyltransferase 2 ... 322 2e-88
Os10g0422200 Similar to Homocysteine S-methyltransferase 3 ... 296 1e-80
Os01g0772900 Similar to Homocysteine S-methyltransferase 4 ... 279 1e-75
>Os03g0221200 Similar to Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S-
methylmethionine:homocysteine methyltransferase 1)
(SMM:Hcy S- methyltransferase 1) (ZmHMT-1)
Length = 282
Score = 561 bits (1447), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/282 (97%), Positives = 274/282 (97%)
Query: 1 MAVAVEEIVRRAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEA 60
MAVAVEEIVRRAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEA
Sbjct: 1 MAVAVEEIVRRAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEA 60
Query: 61 GADVIISSSYQATIPGFLARGMLLEEAEGLLRRSIELALEARDEFWKSTLRKSKPVYNRA 120
GADVIISSSYQATIPGFLARGMLLEEAEGLLRRSIELALEARDEFWKSTLRKSKPVYNRA
Sbjct: 61 GADVIISSSYQATIPGFLARGMLLEEAEGLLRRSIELALEARDEFWKSTLRKSKPVYNRA 120
Query: 121 LVAASIGSYGAYLADGSEYSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNKM 180
LVAASIGSYGAYLADGSEYSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNKM
Sbjct: 121 LVAASIGSYGAYLADGSEYSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNKM 180
Query: 181 EAQAXXXXXXXXNIQVPSWICFSSVDGKNLCSGESFAECLQFLNASDKVTIVGVNCTPPQ 240
EAQA NIQVPSWICFSSVDGKNLCSGESFAECLQFLNASDKVTIVGVNCTPPQ
Sbjct: 181 EAQALVELLEEENIQVPSWICFSSVDGKNLCSGESFAECLQFLNASDKVTIVGVNCTPPQ 240
Query: 241 FIEGIIRELKKQTKKAIAVYPNSGEIWDGRAKRWLVSTTCYT 282
FIEGIIRELKKQTKKAIAVYPNSGEIWDGRAKRWLVSTTCYT
Sbjct: 241 FIEGIIRELKKQTKKAIAVYPNSGEIWDGRAKRWLVSTTCYT 282
>Os12g0607000 Similar to Homocysteine S-methyltransferase 2 (EC 2.1.1.10) (S-
methylmethionine:homocysteine methyltransferase 2)
(SMM:Hcy S- methyltransferase 2) (ZmHMT-2)
Length = 342
Score = 322 bits (825), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/270 (57%), Positives = 196/270 (72%), Gaps = 2/270 (0%)
Query: 9 VRRAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVIISS 68
V GG V+DGG AT+LEA GAD+NDPLWSA CL++ PHL+++VH+ YLEAGA++II++
Sbjct: 23 VEAGGGRLVMDGGLATELEANGADLNDPLWSAKCLLSSPHLVRKVHLDYLEAGANIIITA 82
Query: 69 SYQATIPGFLARGMLLEEAEGLLRRSIELALEARDEFWKSTLRKSKPVYNRALVAASIGS 128
SYQATI GF ++G E++E LL +S+E+A EARD F K +P+ + LVAASIGS
Sbjct: 83 SYQATIQGFESKGFSKEQSEDLLAKSVEIAREARDMFLKE--HSDRPIQHPILVAASIGS 140
Query: 129 YGAYLADGSEYSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNKMEAQAXXXX 188
YGAYLADGSEYSG YGE T E LKDFH+RRL+VLA AGPDLIAFE IPNK+EAQA
Sbjct: 141 YGAYLADGSEYSGDYGEAGTLEFLKDFHKRRLEVLAEAGPDLIAFETIPNKLEAQAYVEL 200
Query: 189 XXXXNIQVPSWICFSSVDGKNLCSGESFAECLQFLNASDKVTIVGVNCTPPQFIEGIIRE 248
NI +P+W F+S DG ++ SG+S EC N KV VG+NCTPP+FI G+I
Sbjct: 201 LDECNISIPAWFSFNSKDGVHIVSGDSLIECATIANGCSKVGAVGINCTPPRFIHGLILS 260
Query: 249 LKKQTKKAIAVYPNSGEIWDGRAKRWLVST 278
++K T K I +YPNSGE +D K W+ ST
Sbjct: 261 IRKVTDKPILIYPNSGERYDAEKKEWVEST 290
>Os10g0422200 Similar to Homocysteine S-methyltransferase 3 (EC 2.1.1.10) (S-
methylmethionine:homocysteine methyltransferase 3)
(SMM:Hcy S- methyltransferase 3) (ZmHMT-3)
Length = 335
Score = 296 bits (757), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/280 (53%), Positives = 190/280 (67%), Gaps = 15/280 (5%)
Query: 7 EIVRRAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAGADVII 66
E +R +GG AVIDGG AT+LEA GAD+ D LWSA CL T P LI++VH+ YLEAGA V+I
Sbjct: 14 EFLRGSGGAAVIDGGLATELEANGADLKDALWSARCLFTCPDLIRKVHLDYLEAGASVLI 73
Query: 67 SSSYQATIPGFLARGMLLEEAEGLLRRSIELALEAR-----------DEFWKSTLRKSKP 115
+ SYQATI GFL++G EE+E LRRS+ELA EAR DE T + +P
Sbjct: 74 TGSYQATIQGFLSKGFSQEESESFLRRSVELACEARAIYLEKCSNGSDEAKDVTKYRKRP 133
Query: 116 VYNRALVAASIGSYGAYLADGSEYSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEA 175
+ L+AAS+GSYGAYLADGSEYSG YG + T E LK+FH RRLQVLA AGPD+I FE
Sbjct: 134 I----LIAASVGSYGAYLADGSEYSGDYGNEGTLEFLKNFHLRRLQVLAEAGPDVIVFET 189
Query: 176 IPNKMEAQAXXXXXXXXNIQVPSWICFSSVDGKNLCSGESFAECLQFLNASDKVTIVGVN 235
IPNK+E QA +++P+W F+S DG N+ SG+S EC ++ +V VG+N
Sbjct: 190 IPNKIETQAYVELLEECKLRIPAWFGFTSKDGVNVVSGDSLIECASIADSCKEVAAVGIN 249
Query: 236 CTPPQFIEGIIRELKKQTKKAIAVYPNSGEIWDGRAKRWL 275
CTPP+FI ++ ++K T K I +YPNSGE +D K W+
Sbjct: 250 CTPPRFIHELVLSIRKVTSKPILIYPNSGESYDPIRKEWV 289
>Os01g0772900 Similar to Homocysteine S-methyltransferase 4 (EC 2.1.1.10) (S-
methylmethionine:homocysteine methyltransferase 4)
(SMM:Hcy S- methyltransferase 4) (ZmHMT-4)
Length = 328
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/282 (52%), Positives = 182/282 (64%), Gaps = 34/282 (12%)
Query: 2 AVAVEEIVRRAGGCAVIDGGFATQLEALGADINDPLWSAACLITKPHLIKEVHMQYLEAG 61
A A+ VR AGGCAV+DGG AT+LEA GAD++D LWSA+CL++ PHLI++VH+ YL+AG
Sbjct: 11 AGALRRFVREAGGCAVVDGGLATELEAHGADLHDELWSASCLVSAPHLIRKVHLDYLDAG 70
Query: 62 ADVIISSSYQATIPGFLARGMLLEEAEGLLRRSIELALEARDEF---WKS---TLRKSKP 115
A++I S+SYQATI GF ARG+ E +E LLRRS+ +A EAR F W +S P
Sbjct: 71 ANIITSASYQATIQGFQARGLSRERSEALLRRSVHIAQEARAIFAEGWSKGPYANHRSSP 130
Query: 116 VYNRALVAASIGSYGAYLADGSEYSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEA 175
LVAASIGSYGAYLADGSEY+G YG +T E LK FHRRRLQVLA AGPDLIAFE
Sbjct: 131 -RRPVLVAASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFET 189
Query: 176 IPNKMEAQAXXXXXXXXNIQVPSWICFSSVDGKNLCSGESFAECLQFLNASDKVTIVGVN 235
IPNK+EAQA SG+ EC +A +V VGVN
Sbjct: 190 IPNKLEAQA---------------------------SGDPITECAAVADACARVGAVGVN 222
Query: 236 CTPPQFIEGIIRELKKQTKKAIAVYPNSGEIWDGRAKRWLVS 277
CT P+ + G+I ++K T K + VYPNSGE + K W+ S
Sbjct: 223 CTAPRLVHGLILSIRKVTSKPVVVYPNSGETYVAETKEWVES 264
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,519,524
Number of extensions: 366973
Number of successful extensions: 866
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 4
Length of query: 282
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 182
Effective length of database: 11,814,401
Effective search space: 2150220982
Effective search space used: 2150220982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)