Os03g0221200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S- methyltransferase 1) (ZmHMT-1).
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Os03g0221200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S- methyltransferase 1) (ZmHMT-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 310.71 | 0.828 | 8.96 | -0.993 | 0.561 | -1.48 | -2.58 | -8.8 | 0.626 | 3.69 | 12.96 | 328 | -- | -- |
| 336.5 | 0.854 | 8.81 | 0.316 | 0.229 | -1.68 | -1.28 | -- | 0.969 | 1.92 | 23.6 | 261 | -- | -- |
| 324.82 | 0.839 | 8.92 | -0.787 | 0.68 | -1.33 | -- | -7.48 | 0.709 | 3.72 | 12.35 | 449 | -- | -- |
| 338.07 | 0.856 | 8.79 | 0.326 | 0.444 | -1.66 | -- | -- | 0.972 | 6.68 | 23.5 | 107 | -- | -- |
| 341.56 | 0.861 | 8.9 | -0.516 | -- | -1.95 | -- | -6.69 | 0.807 | -- | 12.1 | 330 | -- | -- |
| 380.13 | 0.914 | 8.83 | 0.0591 | 1.08 | -- | -0.0799 | -- | 0.77 | 4.81 | -- | -- | -- | -- |
| 380.15 | 0.913 | 8.83 | 0.0596 | 1.08 | -- | -- | -- | 0.77 | 4.84 | -- | -- | -- | -- |
| 344.83 | 0.865 | 8.79 | 0.43 | -- | -1.88 | -- | -- | 1.02 | -- | 23.6 | 207 | -- | -- |
| 341.11 | 0.86 | 8.79 | -- | 0.494 | -1.53 | -- | -- | 0.94 | 6.17 | 23.7 | 106 | -- | -- |
| 441.93 | 0.982 | 8.84 | 0.0998 | -- | -- | -- | -- | 0.798 | -- | -- | -- | -- | -- |
| 380.24 | 0.912 | 8.83 | -- | 1.08 | -- | -- | -- | 0.764 | 4.84 | -- | -- | -- | -- |
| 349.37 | 0.871 | 8.8 | -- | -- | -1.82 | -- | -- | 0.952 | -- | 23.86 | 196 | -- | -- |
| 442.19 | 0.982 | 8.84 | -- | -- | -- | -- | -- | 0.787 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 306.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 10 | 308.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 14 | 308.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 20 | 309.67 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 42 | 311.38 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 58 | 312.54 | temperature | 20 | 14400 | < th | dose dependent | rect. | 16 | 8 |
| 71 | 313.02 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 97 | 313.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 99 | 313.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 102 | 313.94 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 106 | 314.06 | temperature | 20 | 14400 | < th | dose dependent | sin | 18 | NA |
| 114 | 314.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 118 | 314.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 130 | 314.65 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 133 | 314.68 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 138 | 314.86 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 145 | 314.97 | temperature | 20 | 14400 | > th | dose independent | rect. | 9 | 20 |
| 154 | 315.29 | temperature | 20 | 14400 | > th | dose independent | rect. | 2 | 21 |
| 174 | 315.52 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 199 | 315.82 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 218 | 315.94 | temperature | 20 | 14400 | < th | dose independent | rect. | 9 | 20 |
| 224 | 315.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 6 |
| 227 | 316.01 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 230 | 316.06 | wind | 9 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 240 | 316.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 243 | 316.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 251 | 316.23 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 261 | 316.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 267 | 316.31 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 21 |
| 268 | 316.31 | temperature | 20 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 301 | 316.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 339 | 316.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 371 | 316.74 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 376 | 316.76 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 379 | 316.76 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 416 | 316.89 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 448 | 317.03 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 459 | 317.08 | temperature | 20 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 462 | 317.09 | temperature | 20 | 14400 | > th | dose independent | sin | 13 | NA |
| 466 | 317.11 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 492 | 317.19 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 494 | 317.20 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 509 | 317.26 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 538 | 317.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 540 | 317.36 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 19 |
| 568 | 317.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 596 | 317.55 | wind | 7 | 4320 | > th | dose dependent | rect. | 19 | 17 |
| 704 | 317.93 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 719 | 317.93 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 721 | 317.96 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 9 |
| 749 | 318.06 | temperature | 20 | 14400 | > th | dose independent | sin | 22 | NA |
| 753 | 318.07 | temperature | 20 | 14400 | < th | dose independent | sin | 12 | NA |
| 835 | 318.35 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 19 |
| 838 | 318.36 | wind | 7 | 4320 | > th | dose independent | rect. | 19 | 17 |
| 877 | 318.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 887 | 318.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 974 | 318.87 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |