Os01g0772900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Homocysteine S-methyltransferase 4 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 4) (SMM:Hcy S- methyltransferase 4) (ZmHMT-4).
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Os01g0772900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Homocysteine S-methyltransferase 4 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 4) (SMM:Hcy S- methyltransferase 4) (ZmHMT-4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.68 | 0.679 | 4.23 | -3.23 | 1.61 | -1.18 | -2.42 | 2.59 | -0.332 | 9.09 | 82.45 | 29 | -- | -- |
| 228.79 | 0.704 | 4.25 | -3.08 | 1.69 | -1.02 | -2.98 | -- | -0.311 | 9.57 | 86.98 | 43 | -- | -- |
| 226.43 | 0.701 | 4.23 | -3.32 | 1.63 | -1.14 | -- | 3.34 | -0.331 | 9.27 | 82.35 | 21 | -- | -- |
| 265.58 | 0.759 | 4.26 | -3.14 | 1.69 | -0.977 | -- | -- | -0.3 | 9.53 | 87 | 36 | -- | -- |
| 361.79 | 0.891 | 4.28 | -3.37 | -- | -1.32 | -- | 3.15 | -0.289 | -- | 76.71 | 16 | -- | -- |
| 262.87 | 0.76 | 4.21 | -3.19 | 1.77 | -- | -2.78 | -- | -0.0997 | 10.7 | -- | -- | -- | -- |
| 294.89 | 0.804 | 4.21 | -3.3 | 1.78 | -- | -- | -- | -0.107 | 10.8 | -- | -- | -- | -- |
| 399.44 | 0.935 | 4.29 | -3.24 | -- | -1.21 | -- | -- | -0.254 | -- | 76.34 | 7 | -- | -- |
| 528.16 | 1.07 | 4.21 | -- | 1.6 | -1.26 | -- | -- | -0.0382 | 9.31 | 87 | 36 | -- | -- |
| 491.06 | 1.04 | 4.26 | -3.34 | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
| 582.33 | 1.13 | 4.13 | -- | 1.81 | -- | -- | -- | 0.261 | 10.9 | -- | -- | -- | -- |
| 669.03 | 1.21 | 4.23 | -- | -- | -1.41 | -- | -- | 0.0139 | -- | 81.36 | 4 | -- | -- |
| 785 | 1.31 | 4.18 | -- | -- | -- | -- | -- | 0.253 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.66 | humidity | 80 | 10 | > th | dose dependent | sin | 6 | NA |
| 2 | 201.77 | humidity | 80 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 3 | 201.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 5 | 202.43 | humidity | 90 | 30 | < th | dose independent | sin | 5 | NA |
| 18 | 206.39 | humidity | 80 | 30 | > th | dose dependent | rect. | 10 | 20 |
| 20 | 206.49 | humidity | 90 | 30 | > th | dose independent | sin | 5 | NA |
| 24 | 206.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 27 | 207.08 | humidity | 80 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 39 | 207.95 | humidity | 90 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 40 | 208.20 | humidity | 80 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 43 | 208.36 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 46 | 208.42 | humidity | 90 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 51 | 208.58 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 17 |
| 56 | 208.65 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 3 |
| 59 | 208.78 | radiation | 1 | 90 | < th | dose independent | sin | 6 | NA |
| 66 | 208.90 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 73 | 209.00 | radiation | 1 | 90 | > th | dose independent | sin | 6 | NA |
| 88 | 209.65 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 18 |
| 92 | 209.67 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 97 | 209.71 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 11 |
| 99 | 209.76 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 12 |
| 106 | 209.82 | humidity | 90 | 90 | > th | dose dependent | rect. | 23 | 13 |
| 108 | 209.83 | humidity | 80 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 113 | 210.03 | radiation | 1 | 90 | < th | dose dependent | sin | 5 | NA |
| 149 | 210.46 | humidity | 80 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 151 | 210.48 | humidity | 80 | 30 | > th | dose dependent | no | NA | NA |
| 154 | 210.49 | humidity | 80 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 155 | 210.50 | humidity | 80 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 157 | 210.52 | humidity | 80 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 177 | 210.78 | humidity | 80 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 225 | 211.53 | humidity | 80 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 254 | 212.09 | radiation | 1 | 720 | < th | dose dependent | sin | 6 | NA |
| 281 | 212.42 | humidity | 90 | 10 | < th | dose independent | rect. | 5 | 7 |
| 294 | 212.59 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 6 |
| 299 | 212.66 | humidity | 80 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 311 | 212.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 352 | 213.42 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 379 | 213.63 | temperature | 20 | 30 | > th | dose independent | rect. | 6 | 7 |
| 403 | 213.89 | humidity | 90 | 10 | < th | dose independent | rect. | 5 | 22 |
| 411 | 213.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 4 |
| 439 | 214.25 | humidity | 80 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 493 | 214.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 533 | 215.35 | humidity | 90 | 30 | < th | dose independent | rect. | 1 | 11 |
| 535 | 215.37 | humidity | 70 | 30 | > th | dose dependent | rect. | 20 | 10 |
| 557 | 215.69 | humidity | 90 | 30 | < th | dose independent | rect. | 1 | 23 |
| 573 | 215.82 | humidity | 90 | 90 | > th | dose independent | rect. | 23 | 22 |
| 574 | 215.84 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 15 |
| 596 | 216.05 | humidity | 90 | 30 | < th | dose independent | rect. | 17 | 20 |
| 604 | 216.12 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 9 |
| 606 | 216.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 687 | 216.83 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 693 | 216.85 | humidity | 90 | 30 | < th | dose independent | no | NA | NA |
| 720 | 217.07 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 795 | 217.57 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 4 |
| 802 | 217.66 | humidity | 90 | 10 | < th | dose independent | rect. | 5 | 19 |
| 813 | 217.68 | humidity | 90 | 720 | > th | dose dependent | no | NA | NA |
| 827 | 217.79 | humidity | 80 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 830 | 217.80 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 836 | 217.86 | humidity | 90 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 839 | 217.89 | humidity | 90 | 30 | > th | dose independent | rect. | 20 | 22 |
| 842 | 217.90 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 851 | 217.94 | humidity | 90 | 30 | < th | dose independent | rect. | 16 | 23 |
| 862 | 218.04 | humidity | 90 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 873 | 218.09 | humidity | 90 | 30 | < th | dose independent | rect. | 14 | 23 |
| 919 | 218.31 | humidity | 90 | 90 | < th | dose independent | rect. | 17 | 16 |
| 933 | 218.39 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 967 | 218.61 | humidity | 90 | 30 | > th | dose independent | rect. | 20 | 16 |