BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0772900 Os01g0772900|AK073362
(328 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22740.1 | chr3:8033200-8035710 REVERSE LENGTH=348 332 1e-91
AT3G63250.1 | chr3:23370575-23372587 REVERSE LENGTH=334 331 4e-91
AT3G25900.1 | chr3:9480964-9482684 FORWARD LENGTH=327 266 2e-71
>AT3G22740.1 | chr3:8033200-8035710 REVERSE LENGTH=348
Length = 347
Score = 332 bits (852), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/321 (53%), Positives = 210/321 (65%), Gaps = 30/321 (9%)
Query: 17 FVREAGGCAVVDGGLATELEAHGADLHDELWSASCLVSAPHLIRKVHLDYLDAGANIITS 76
F+ + GG AVVDGG ATEL+ HGAD++D LWSA CL+++PHL+ KVHLDYL++GANII +
Sbjct: 16 FLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLESGANIIIT 75
Query: 77 ASYQATIQGFQAXXXXXXXXXXXXXXXVHIAQEARAIFAEGWSKGP--YANHRSSPRRPV 134
ASYQATIQGF A V I EAR IF +KG +A + RRP+
Sbjct: 76 ASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASRRPI 135
Query: 135 LVAASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKL 194
LVAAS+GSYGAYLADGSEY+G YG SV+KETLK FHRRR+Q+LA +G DLIAFETIPNKL
Sbjct: 136 LVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKL 195
Query: 195 EAQA---------------------------SGDPITEXXXXXXXXXXXXXXXXNCTAPR 227
EA+A GD + E NCTAPR
Sbjct: 196 EAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIGINCTAPR 255
Query: 228 LVHGLILSIRKVTSKPVVVYPNSGETYVAETKEWVESEGGASETDFVSCVGKWRQAGAAL 287
+H LI+S+R++T KP+VVYPNSGE Y K+W++SE G SE DFVS V KWR AGA+L
Sbjct: 256 YIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSE-GESEEDFVSYVSKWRDAGASL 314
Query: 288 VGGCCRTSPATVRAISWALRE 308
GGCCRT+P T+RAI+ L +
Sbjct: 315 FGGCCRTTPNTIRAIAKVLSD 335
>AT3G63250.1 | chr3:23370575-23372587 REVERSE LENGTH=334
Length = 333
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 170/313 (54%), Positives = 204/313 (65%), Gaps = 28/313 (8%)
Query: 17 FVREAGGCAVVDGGLATELEAHGADLHDELWSASCLVSAPHLIRKVHLDYLDAGANIITS 76
F+++ GG AV+DGGLATE E HGADL+D LWSA CLV++PHLI VHLDYL+AGA+II+S
Sbjct: 12 FLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADIISS 71
Query: 77 ASYQATIQGFQAXXXXXXXXXXXXXXXVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLV 136
ASYQATIQGF+A V IA EAR + + + + +RP+LV
Sbjct: 72 ASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSSMDDKILKKRPILV 131
Query: 137 AASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKLEA 196
AAS+GSYGAYLADGSEY+G YG S+T E LK FHRRRLQVLA++G DLIAFETIPNK+EA
Sbjct: 132 AASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEA 191
Query: 197 QA---------------------------SGDPITEXXXXXXXXXXXXXXXXNCTAPRLV 229
QA SGD I E NCT PR +
Sbjct: 192 QAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAENCEKVVAVGINCTPPRFI 251
Query: 230 HGLILSIRKVTSKPVVVYPNSGETYVAETKEWVESEGGASETDFVSCVGKWRQAGAALVG 289
GL+L I KVTSKP++VYPNSGE+Y A+ KEWVE+ G E DFVS V KW AG +L+G
Sbjct: 252 EGLVLEIEKVTSKPILVYPNSGESYDADRKEWVENTGVGDE-DFVSYVEKWMDAGVSLLG 310
Query: 290 GCCRTSPATVRAI 302
GCCRT+P T+RAI
Sbjct: 311 GCCRTTPTTIRAI 323
>AT3G25900.1 | chr3:9480964-9482684 FORWARD LENGTH=327
Length = 326
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 186/318 (58%), Gaps = 33/318 (10%)
Query: 17 FVREAGGCAVVDGGLATELEAHGADLHDELWSASCLVSAPHLIRKVHLDYLDAGANIITS 76
+++ GGCAVVDGG AT+LE HGA ++D LWSA L+ P LI++VH++YL+AGA+I+ +
Sbjct: 13 LIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGADIVVT 72
Query: 77 ASYQATIQGFQAXXXXXXXXXXXXXXXVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLV 136
+SYQATI GF + V +A EAR F W K + S R LV
Sbjct: 73 SSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRF---WEKVSKVSGHSYNR--ALV 127
Query: 137 AASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKLEA 196
AASIGSYGAYLADGSEY+G YG +V+ + LK FHRRRLQVL +AGPDL+AFETIPNKLEA
Sbjct: 128 AASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEA 187
Query: 197 QA---------------------------SGDPITEXXXXXXXXXXXXXXXXNCTAPRLV 229
QA SG+ E NC P+ +
Sbjct: 188 QACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYAVGINCAPPQFI 247
Query: 230 HGLILSIRKVTSKPVVVYPNSGETYVAETKEWVESEGGASETDFVSCVGKWRQAGAALVG 289
LI K+T K +VVYPNSGE + + K+W+ S+ + +F KWR GA L+G
Sbjct: 248 ENLIRKFAKLTKKAIVVYPNSGEVWDGKAKQWLPSQCFGDD-EFEMFATKWRDLGAKLIG 306
Query: 290 GCCRTSPATVRAISWALR 307
GCCRT+P+T+ AIS L+
Sbjct: 307 GCCRTTPSTINAISRDLK 324
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,858,470
Number of extensions: 210327
Number of successful extensions: 465
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 3
Length of query: 328
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,392,385
Effective search space: 1921856165
Effective search space used: 1921856165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)